| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 164559 = | 47 (1.210) | 4 (0.110) | 4/268 | 5.1 | 9.6% | intergenic (+25/‑171) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913_3_pae_tpiA | 289255 = | 31 (0.850) | intergenic (‑93/+46) | yagI/argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAGGATCTGCAACGCACGTTCAACAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCTCGTCCGTC > NC_000913_3_pae_tpiA/289121‑289403 | gAGGATCTGCAACGCACGTTCAACAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCAGGAATTAAGGCGGAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAACCGGTGTT‑CTGCATCTCCCCGTGGGAGAGGGctc > 2:188475/1‑147 (MQ=255) tGCAAGGCAAGTTCAACAGACTGAATAATGGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAg < 2:23916/149‑1 (MQ=255) gctaggtaCGTCCAAAAGATGGAATGATTGTGATAGTGCTGGTATGTCCACGATGGAATTAAGGCGAAAGCGTGCGTTTTTCGGGATGAAAACTCAATGTCATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAgg < 2:488143/142‑1 (MQ=19) aaCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGACAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGGGCa > 2:480436/1‑149 (MQ=255) aCAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑TGCCCTGTCACTGGGGGCAAGCGCCGGGGTGAGGGCACCACCGCGCAg > 2:584707/1‑149 (MQ=255) gACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGG‑GGCGGAGTTGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCgg > 1:331168/1‑149 (MQ=38) aCTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCACAGGGAGAgg > 1:66304/1‑119 (MQ=255) aCTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCACAGGGAGAgg > 1:66307/1‑119 (MQ=255) aCTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCACAGGGAGAgg < 2:66304/119‑1 (MQ=255) aCTGAATAATCGGCATAATACTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGa < 1:419020/149‑1 (MQ=255) aataatCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCa > 1:500178/1‑149 (MQ=255) ataatCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAATACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCaa < 2:139595/149‑1 (MQ=255) aatCGACATAAGGCTGGCCTGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATc < 2:32774/149‑1 (MQ=255) tGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTcc < 2:401962/140‑1 (MQ=255) tGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTcc > 1:401962/1‑140 (MQ=255) aTGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCca > 2:334909/1‑149 (MQ=255) gttcACGCTGGTATTAAGGCGCAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGGCGAGGTGAGGGCACCACCGCGCAGCGGACCCAATCACTGCTCGAGGGTTGcccag > 2:323228/4‑146 (MQ=37) aCGCTGGAATTAAGGCGAAAACGTACCTTGTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTGCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAACCACCCCCCCACCGTTGCCAccatca > 2:657200/1‑149 (MQ=38) tttttCGGGATGAAAAATCAATGAAATGGAGCCGTTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGGGGGCACCACCGCGCAGCGGCCCCAATCACTCCCCAAGCGTTGCCATCATCACGCCCTTAATCGTCTGCATCCGGtttt > 1:112703/1‑149 (MQ=38) tttttCGGGATGAAAAATCAATAAAATGGAGGCGGTGTT‑CTTCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGtttt < 2:261267/149‑1 (MQ=255) tttCGGGATGAAAAACCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTcc < 2:57768/149‑1 (MQ=255) cGGGATGAAAAATCAAGGAAATGGGGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGcc < 2:331168/149‑1 (MQ=255) cGGGAGGAAAAAGCAGTGAAATGGAGCCGGTGTT‑CTCGCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAGCGCGCAGCGGACCCAATCACGCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGcc < 2:430068/149‑1 (MQ=38) ggATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTg < 1:334909/149‑1 (MQ=255) aTGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTc < 2:607754/130‑1 (MQ=255) aTGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTc > 1:607754/1‑130 (MQ=255) aTGAAAGGGAACCGGGGTT‑CTCCCCCTCCCTGTGGGAGAGGGCCGCGGTGAGGGCACCCACGCGCAGCTGACCCAATCCCTCCCCAAGCGTTGCCATCCTCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATg < 2:473692/149‑1 (MQ=255) aaaTGGGGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTc < 2:565803/149‑1 (MQ=255) aaTGGAGCTGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTcg > 1:585032/1‑149 (MQ=255) ccGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGa < 1:455700/149‑1 (MQ=255) gtgtT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCTCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTc < 1:258848/149‑1 (MQ=255) ccccctcgccctGGGGGAGAGGGCCGGGGTGAGGGCACCAACGCGAAGCGGACCCGATCACTCCCCAAGCTGTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAaca < 2:247225/147‑1 (MQ=255) ccctctcccaCAGGGAGATGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAAcccc > 2:82293/1‑149 (MQ=255) cctGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCCCGCCGCCGACTCAAACACCTcgtccg > 2:243247/1‑149 (MQ=255) ctGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTCATCGTATGCATCCGGTTTTCCGCCTGGTGGAACACGATGCTCGCCGCCGACTCAACCCCCTcgtccgt > 2:166014/1‑149 (MQ=255) tgtgGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCTcgtccgtc < 1:411554/149‑1 (MQ=255) | GAGGATCTGCAACGCACGTTCAACAGACTGAATAATCGGCATAATGCTGGCATGTCCACGCTGGAATTAAGGCGAAAACGTACCTTTTTCGGGATGAAAAATCAATGAAATGGAGCCGGTGTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTATGCATCCGGTTTTCCGCCTGGTCGAACACGATGCTCGCCGCCGACTCAAACACCTCGTCCGTC > NC_000913_3_pae_tpiA/289121‑289403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |