Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	3423755–3424234	3424553–3424238	5–799	14 [13]	[13] 15	[rrfD]–[rrlD]	[rrfD],[rrlD]

ACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCT  >  NC_000913_3_pae_tpiA/3424512‑3424702                                           |                                                                                                                                                     aCTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTcc                                            <  1:481903/149‑1 (MQ=32)   tctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCCCACTTCTAAGCCTCCCa                                          >  2:163578/1‑149 (MQ=17)   tatttAGGAGGAGAGCGCGACAGTAAAAGTAAGGACCAGATAGTGTCGGTAACAAGGATTACGGGTCAAGGGTAGAACATAAAACATTAAAGGGTGGTATTTCAAGGTCGGGTCCATGCAGACTGGCGTACAAACTTCTCAGCCtgtca                                          >  2:308807/3‑145 (MQ=2)                 ccGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTGCCACCTATCCTaca                               >  1:662416/1‑146 (MQ=17)                 ccGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTaca                               <  2:662416/146‑1 (MQ=32)                      ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTacac                              <  1:1258/142‑1 (MQ=32)                      ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTacac                              >  2:1258/1‑142 (MQ=32)                              aCTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACCCATCAAGGCTCAATGt               >  2:331416/1‑149 (MQ=17)                               cTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGtt              <  2:345630/149‑1 (MQ=32)                                  cccACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATGAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCCCCTATCCTACACATCAAAGCTCAATGTTCAg           >  1:250552/1‑149 (MQ=12)                                    caccaGACACTGTCGGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAgtg         >  1:681447/1‑149 (MQ=17)                                       caGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGGCTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATAAAGGCTACATGTCCAGTGTCa      >  2:448028/1‑149 (MQ=11)                                         gACACTGTCCGCAACCCGGATTACGTGTCAACGTTACAACATCAAACATTAAAGGGTGGTATTTCAAGGGCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCCGTGTCAAg    <  2:218681/149‑1 (MQ=255)                                           cacTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTCTTTCAAGGTCGGCTCCATGCAGACTGGCGCCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCt  >  2:185596/1‑149 (MQ=17)                                           cacTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCt  <  1:260331/149‑1 (MQ=32)                                           |                                                                                                                                                     ACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCT  >  NC_000913_3_pae_tpiA/3424512‑3424702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑