| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4459788 | 94 (0.990) | 10 (0.110) | 10/256 | 10.7 | 10.8% | intergenic (+17/+28) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913_3_pae_tpiA | = 4459802 | 78 (0.880) | intergenic (+31/+14) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCACGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/4459634‑4459788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGACC < NC_000913_3_pae_tpiA/4459802‑4459658 CGCCACGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCC < 4:49847/150‑1 CCACGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 1:960500/1‑150 CGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT < 1:599036/150‑1 TGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGC < 2:557790/150‑1 TCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGG > 1:672429/1‑150 CGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGA > 1:858481/1‑150 ATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGA < 2:858481/150‑1 AGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCG < 2:672429/150‑1 AGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCCCAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTT < 3:168054/150‑1 GCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAG < 4:371139/65‑1 GCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAG > 3:371139/1‑65 ATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAA < 1:386104/78‑1 ATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAA > 2:386104/1‑78 TTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCT < 1:401501/150‑1 TCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTG > 4:515692/1‑150 CCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGA < 1:856912/150‑1 CCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGA > 1:410141/1‑150 CCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGA < 1:279671/150‑1 CTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGACC > 2:351191/1‑150 CTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGACC < 3:161321/150‑1 CGCCACGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/4459634‑4459788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTTTTACTTTACCTTCATTTGCCAGCTTCAGCGCGTCGTCAATCTGACC < NC_000913_3_pae_tpiA/4459802‑4459658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |