Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	4166293–4168136	4171466–4168488	353–5174	36 [35]	[35] 36	rrsB–rrlB	rrsB,gltT,rrlB

GATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG  >  NC_000913_3_pae_tpiA/4171415‑4171616                                                     |                                                                                                                                                      gATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa                                                      <  4:467891/150‑1 (MQ=11)  aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg                                                     >  2:763187/1‑150 (MQ=14)  aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg                                                     >  2:262678/1‑150 (MQ=14)  aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAg                                                     <  1:741257/150‑1 (MQ=14)        tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgcgc                                               <  2:158876/150‑1 (MQ=17)         gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGcgcg                                              <  3:98205/150‑1 (MQ=32)           gCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt                                            <  1:630212/150‑1 (MQ=17)            cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg                                           >  1:582596/1‑150 (MQ=17)                ccGGTACTGATGAAGCGGGAGGCTTAACCTTACAACGCCGATGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGTGGTcc                                       <  2:63794/150‑1 (MQ=11)                       tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGa                                >  1:428213/1‑150 (MQ=17)                       tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGa                                <  4:202667/150‑1 (MQ=17)                       tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGa                                >  1:303612/1‑150 (MQ=17)                       tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGCAGCGCGGTGGTCCCACCTGa                                >  1:428412/1‑150 (MQ=17)                         aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAcc                              <  3:210784/150‑1 (MQ=17)                          tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                             <  3:387416/150‑1 (MQ=17)                           gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                        <  4:354540/138‑1 (MQ=18)                           gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                        >  3:354540/1‑138 (MQ=18)                               cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc                        <  4:271989/150‑1 (MQ=17)                                gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                       >  1:6173/1‑150 (MQ=17)                                 tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGTCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCg                      <  3:120245/150‑1 (MQ=17)                                 tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAACCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCg                      >  1:490185/1‑150 (MQ=17)                                      cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                 >  1:154042/1‑150 (MQ=17)                                      cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                 >  1:154015/1‑150 (MQ=17)                                      cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGAGGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACTCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCCAACTc                 >  4:52578/1‑150 (MQ=12)                                       ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCa                >  1:535045/1‑150 (MQ=17)                                       ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGCCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCa                <  2:572413/150‑1 (MQ=17)                                         aaCCTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAGTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa              >  2:518109/1‑150 (MQ=17)                                           ccTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAg            <  2:31385/150‑1 (MQ=17)                                            cTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt           <  4:214696/150‑1 (MQ=17)                                            cTTACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGACTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt           >  2:565575/1‑150 (MQ=12)                                             ttACAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTg          <  1:763187/150‑1 (MQ=17)                                               aCAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaa        >  3:16455/1‑150 (MQ=17)                                               aCAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaa        >  2:306316/1‑150 (MQ=17)                                                cAACGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa       <  1:726974/150‑1 (MQ=17)                                                 aaCGCCGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc      >  1:116723/1‑150 (MQ=17)                                                     ccGAAGCTGTTTTGGCGGATGAAAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCg  <  1:341417/150‑1 (MQ=17)                                                     |                                                                                                                                                      GATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG  >  NC_000913_3_pae_tpiA/4171415‑4171616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑