Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913_3_pae_tpiA 2,759,615 G→A E211K (GAA→AAA)  yfjI → CP4‑57 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_tpiA2,759,6150GA100.0% 297.6 / NA 84E211K (GAA→AAA) yfjICP4‑57 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (44/40);  total (44/40)

CACCTGCAGCTATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGGAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCATGTGC  >  NC_000913_3_pae_tpiA/2759469‑2759761
                                                                                                                                                  |                                                                                                                                                  
cacCTGCAGCTATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTgaaaa                                                                                                                                                 >  1:440486/1‑150 (MQ=255)
   cTGCAGCTATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTgaaaagga                                                                                                                                              <  2:26428/150‑1 (MQ=255)
      cAGCTATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGaaaa                                                                                                                                           <  3:398531/150‑1 (MQ=255)
          tATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGa                                                                                                                                       <  4:236126/150‑1 (MQ=255)
           aTTAAAGCTCATCTCTGTGGGCACTGGCGATCAGACGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAg                                                                                                                                      >  4:157972/1‑150 (MQ=255)
              aaaGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTggaaag                                                                                                                                                >  2:46727/1‑137 (MQ=255)
              aaaGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTggaaag                                                                                                                                                <  1:46727/137‑1 (MQ=255)
                aGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCga                                                                                                                                 <  2:220986/150‑1 (MQ=255)
                        tctGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGaaaaa                                                                                                                                          >  2:413464/1‑133 (MQ=255)
                        tctGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGaaaaa                                                                                                                                          <  1:413464/133‑1 (MQ=255)
                           gtgGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAattaatta                                                                                                                      <  4:525346/150‑1 (MQ=255)
                           gtgGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAattaatta                                                                                                                      <  2:596833/150‑1 (MQ=255)
                           gtgGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAattaatta                                                                                                                      >  1:689701/1‑150 (MQ=255)
                             gggCAGTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGACAAGGAAAAACGAGCCCGAGACATTAATTaga                                                                                                                    <  4:75963/150‑1 (MQ=255)
                             gggCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTaga                                                                                                                    <  2:440486/150‑1 (MQ=255)
                             gggCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTaga                                                                                                                    >  1:669250/1‑150 (MQ=255)
                              ggCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTagag                                                                                                                   >  4:469241/1‑150 (MQ=255)
                               gaaCTGGAGAACAATCGGAAACATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCCATAAGATGTAGGCTGGTTCAATATTTAAAAAAAAAAGGAAAAACGAGCCCGAGAAATTAATTAgaga                                                                                                                  <  2:78789/148‑1 (MQ=255)
                                     gCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAg                                                                                                            >  1:247372/1‑150 (MQ=255)
                                           aGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAac                                                                                                      >  4:232194/1‑150 (MQ=255)
                                                 catcatGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCACTAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTc                                                                                                >  1:821954/1‑150 (MQ=255)
                                                  atcatGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCg                                                                                               >  1:279827/1‑150 (MQ=255)
                                                      tGTCTGAGGAAGGTGGGGTCATTTTTAATGGTTACACGCTTGGCGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATGTTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGCGATGCAAGAATAACACTGTCGCTGa                                                                                           <  2:788501/150‑1 (MQ=255)
                                                        tCTGATGAAGCTGGGATCATTTTTAATGGTTGCACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATg                                                                                         >  1:449464/1‑150 (MQ=255)
                                                          tgatgaAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGt                                                                                       >  3:486356/1‑150 (MQ=255)
                                                           gatgaAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTc                                                                                      >  3:278770/1‑150 (MQ=255)
                                                           gatgaAGCTGGGATCATTTTAAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTc                                                                                      >  4:299337/1‑150 (MQ=255)
                                                            atgaAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTcc                                                                                     >  1:712843/1‑150 (MQ=255)
                                                               aaGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCCAGAATAACGCTGTCGCTGATGGTCCAGc                                                                                  <  4:148121/150‑1 (MQ=255)
                                                                 gCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAaattaa                                                                                                                         >  1:732584/1‑109 (MQ=255)
                                                                 gCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAaattaa                                                                                                                         <  2:732584/109‑1 (MQ=255)
                                                                   tGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGAt                                                                                                                 <  1:211471/115‑1 (MQ=255)
                                                                   tGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGAt                                                                                                                 >  2:211471/1‑115 (MQ=255)
                                                                       aTCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGtt                                                                          >  2:749283/1‑150 (MQ=255)
                                                                       aTCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGtt                                                                          <  4:486356/150‑1 (MQ=255)
                                                                         cATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGtttt                                                                        <  2:247372/150‑1 (MQ=255)
                                                                              ttAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAgg                                                                   >  1:128323/1‑150 (MQ=255)
                                                                              ttAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAgg                                                                   <  1:656935/150‑1 (MQ=255)
                                                                               tAAGGGTTACACACTTAACGAGCTGCCGTTTATCAATAAAATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAggg                                                                  <  4:310903/150‑1 (MQ=255)
                                                                                 aTGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGtt                                                                <  2:128323/150‑1 (MQ=255)
                                                                                  tGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTta                                                               >  1:174292/1‑150 (MQ=255)
                                                                                       acacacTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAAAAACACTGTCGCTGATGGTCCAGCCTAATGATTGTAAGGGTTATATCg                                                          >  2:266474/1‑150 (MQ=255)
                                                                                        cacacTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGa                                                         >  2:53374/1‑150 (MQ=255)
                                                                                         acacTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTag                                                                                                                     >  1:204007/1‑89 (MQ=255)
                                                                                         acacTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTag                                                                                                                     <  2:204007/89‑1 (MQ=255)
                                                                                           acTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAAGTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATAACGACAg                                                      >  3:301468/1‑150 (MQ=255)
                                                                                             ttAACGAGCTGCCGTTTATCAATAAGATGTGGGCTGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATCTCGACAGGa                                                    >  2:748300/1‑150 (MQ=255)
                                                                                                  gAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGga                                               >  3:53538/1‑150 (MQ=255)
                                                                                                   aGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGgag                                              <  2:712843/150‑1 (MQ=255)
                                                                                                      tGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGata                                           <  1:280431/150‑1 (MQ=255)
                                                                                                         cGTTTATCAATAAGATGTGGGATGGGTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATgg                                        <  3:299337/150‑1 (MQ=255)
                                                                                                          gTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTaa                                                                     <  1:501895/120‑1 (MQ=255)
                                                                                                          gTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTaa                                                                     >  2:501895/1‑120 (MQ=255)
                                                                                                            ttATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTagag                                                                                                                   >  1:165513/1‑72 (MQ=255)
                                                                                                            ttATCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTagag                                                                                                                   <  2:165513/72‑1 (MQ=255)
                                                                                                              aTCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTag                                                                                                                     <  4:52519/68‑1 (MQ=255)
                                                                                                              aTCAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTag                                                                                                                     >  3:52519/1‑68 (MQ=255)
                                                                                                                cAATAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATTGTCCAGCCTAATCTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAggg                                 >  4:490842/1‑150 (MQ=255)
                                                                                                                  aTAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGgga                               >  1:214582/1‑150 (MQ=255)
                                                                                                                   tAAGATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCAGATGGTCCAGCCTAATGTTTTTAAGCGTTATATCAACAGGAAAGGAAATATGGCAAAGGggat                              >  2:549469/1‑150 (MQ=255)
                                                                                                                    aaGATGTGGGATGGTTGAAGATTGACGGGTAAAAGGAAAAACGAGCCCGGGAAATTAAGTAGAGATGCAAGGATAACACAGTCGCTTGTGGTCCAGCCTAATGTTTTTGAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGggatt                             <  4:485951/150‑1 (MQ=255)
                                                                                                                      gATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGata                                           >  1:506564/1‑134 (MQ=255)
                                                                                                                      gATGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGata                                           <  2:506564/134‑1 (MQ=255)
                                                                                                                       aTGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTTCAGACTAATTTTTTTAAGGGTTATATCAACTGGAATTGACATATGGAAAAGTgaactgga                          <  2:821954/150‑1 (MQ=255)
                                                                                                                       aTGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTta                                                               >  2:716203/1‑113 (MQ=255)
                                                                                                                       aTGTGGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTta                                                               <  1:716203/113‑1 (MQ=255)
                                                                                                                          tgGGATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGAttt                       <  3:35656/150‑1 (MQ=255)
                                                                                                                           gggATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGAc                                                        <  4:238954/116‑1 (MQ=255)
                                                                                                                           gggATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGAc                                                        >  3:238954/1‑116 (MQ=255)
                                                                                                                            ggATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGAttttt                     <  1:53374/150‑1 (MQ=255)
                                                                                                                             gATGGTTCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGAtttttt                    <  2:689701/150‑1 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTc                                                                                                >  2:440411/1‑69 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTc                                                                                                <  1:440411/69‑1 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGggatt                             <  4:254663/136‑1 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGggatt                             >  3:254663/1‑136 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACg               >  1:266975/1‑150 (MQ=255)
                                                                                                                                  ttCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACAGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACg               >  4:514371/1‑150 (MQ=255)
                                                                                                                                   tCAATATTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACgg              >  2:63968/1‑150 (MQ=255)
                                                                                                                                      atatTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGc           >  2:715572/1‑150 (MQ=255)
                                                                                                                                       tatTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGcc          <  1:715572/150‑1 (MQ=255)
                                                                                                                                       tatTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGcc          >  2:77555/1‑150 (MQ=255)
                                                                                                                                        atTTACGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCt         <  2:174292/150‑1 (MQ=255)
                                                                                                                                          ttACGGTCAAAAGGAAAAACGAGCACGAGAAACTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCa       >  4:131343/1‑150 (MQ=255)
                                                                                                                                             cGGTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCAtgt    <  2:96621/150‑1 (MQ=255)
                                                                                                                                             cGGTGAAAAGGAAAAACGAGCCAGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCAtgt    <  4:324666/150‑1 (MQ=255)
                                                                                                                                              ggTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCAtgtg   >  1:628435/1‑150 (MQ=255)
                                                                                                                                              ggTGAAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCAtgtg   >  2:720997/1‑150 (MQ=255)
                                                                                                                                               gTGAAAAGGAAAAACGAGCCAGAGGCATTAATGTGACTGGCGTGAAGAACACTGTCGCTGAGGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCATGTGc  <  3:232194/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CACCTGCAGCTATTAAAGCTCATCTCTGTGGGCACTGGCGATCAGTCGGCATCATGTCTGATGAAGCTGGGATCATTTTTAATGGTTACACACTTAACGAGCTGCCGTTTATCAATAAGATGTGGGATGGTTCAATATTTACGGTGGAAAGGAAAAACGAGCCCGAGAAATTAATTAGAGATGCAAGAATAACACTGTCGCTGATGGTCCAGCCTAATGTTTTTAAGGGTTATATCGACAGGAAAGGAGATATGGCAAAGGGGATTGGATTTTTTGCACGGTGCCTCATGTGC  >  NC_000913_3_pae_tpiA/2759469‑2759761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: