Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913_3_pae_tpiA | 3,215,447 | C→A | G9G (GGG→GGT) | mug ← | G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913_3_pae_tpiA | 3,215,447 | 0 | C | A | 98.5% | 230.9 / ‑5.1 | 66 | G9G (GGG→GGT) | mug | G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (29/36); total (30/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
GTGCCTCCTGCGGCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAACCCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACTTTATA > NC_000913_3_pae_tpiA/3215305‑3215585 | gtgCCTCCTGCGGCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAg > 1:742335/1‑150 (MQ=255) gCGGCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAatat > 2:355043/1‑150 (MQ=255) ggCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATcc < 4:490361/150‑1 (MQ=255) ggCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATcc < 2:667223/150‑1 (MQ=255) aaCTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAAcc > 4:359249/1‑150 (MQ=255) aaCTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAAcc > 1:437590/1‑150 (MQ=255) aCGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATAtt < 2:34635/150‑1 (MQ=255) ggtcggtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTa < 1:355043/150‑1 (MQ=255) gtcggtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTAc > 2:4992/1‑150 (MQ=255) gtcggtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTAc < 3:11486/150‑1 (MQ=255) gtcggtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTAc > 2:161148/1‑150 (MQ=255) ggtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTcc > 1:760880/1‑150 (MQ=255) gtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCt > 1:728817/1‑150 (MQ=255) gtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCt > 1:818274/1‑150 (MQ=255) gtAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCt < 1:287544/150‑1 (MQ=255) gctaggacTGTTATAGCACCTTCCAGGAGCGATTTTGCAGATAAGCTAAGGGGAAACCAATCCCTGCGGATTAAAGACCAGGTTTTATACCGTAAAACACGTCGCGTAAACCTGAAGCCAAAATTTCCTCAACCATATTTACTCCTTTCt < 2:635705/143‑1 (MQ=255) ccGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTaa > 1:292206/1‑150 (MQ=255) ccGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGACACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTaa > 2:589055/1‑150 (MQ=255) cTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCa > 1:398975/1‑150 (MQ=255) atatatCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCa < 2:247389/150‑1 (MQ=255) atatatCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCa < 4:434333/150‑1 (MQ=255) aCCTTCCAGAAGCGATTTGCCGGATGACCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGGTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAg > 2:14302/1‑150 (MQ=255) ccAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATaa > 1:260558/1‑150 (MQ=255) aGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACg < 2:818274/150‑1 (MQ=255) aGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACg < 1:161148/150‑1 (MQ=255) gAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACgg > 4:302406/1‑150 (MQ=255) cGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGAAAACCAGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTg > 3:49064/1‑150 (MQ=255) tttGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATc > 4:40937/1‑95 (MQ=255) tttGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATc < 3:40937/95‑1 (MQ=255) taaccactGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAAt > 4:76822/8‑150 (MQ=255) ccGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATAc < 2:141654/150‑1 (MQ=255) ggATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACAt < 2:128958/150‑1 (MQ=255) gATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCTCCAGGAAAAGTATAACGGATTGAAAATACAtt < 4:335540/150‑1 (MQ=255) aTGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTg < 3:513893/150‑1 (MQ=255) gAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGtt < 4:149317/150‑1 (MQ=255) aGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGttt < 4:378237/150‑1 (MQ=255) aGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATaaa < 2:312879/150‑1 (MQ=255) ggAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATaaaaa > 1:804589/1‑150 (MQ=255) gAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAAc < 2:458329/150‑1 (MQ=255) ccGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAAcag < 2:152899/141‑1 (MQ=255) ccGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAAcag > 1:152899/1‑141 (MQ=255) cggcggATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGcgcgcg > 1:150090/1‑150 (MQ=255) tGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATgg < 3:302406/150‑1 (MQ=255) gAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACt < 2:590338/72‑1 (MQ=255) gAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACt > 1:590338/1‑72 (MQ=255) gAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTtat > 4:242246/1‑124 (MQ=255) gAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTtat < 3:242246/124‑1 (MQ=255) aaGCCCAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTg < 3:359249/150‑1 (MQ=255) aaGCCCAGGGTTGATACCGCAAAACACAACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCAc > 1:432589/1‑85 (MQ=255) aaGCCCAGGGTTGATACCGCAAAACACAACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCAc < 2:432589/85‑1 (MQ=255) ccAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGAtt > 4:390932/1‑150 (MQ=255) ccAGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGAtt < 1:281467/150‑1 (MQ=255) aGGGTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGc < 3:134206/150‑1 (MQ=255) gggTTGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCAACAGGAAAAGTATAATGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCg < 2:437590/150‑1 (MQ=255) ttGATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGaca < 3:236105/150‑1 (MQ=255) gATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCAcc < 2:100930/74‑1 (MQ=255) gATACCGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCAcc > 1:100930/1‑74 (MQ=255) tACCGCAAAACACGACCCGTAAACCTGAAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGa < 4:49064/150‑1 (MQ=255) cGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGtt > 3:167452/1‑150 (MQ=255) cGCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGtt > 2:716378/1‑150 (MQ=255) gCAAAACACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTa < 2:804589/150‑1 (MQ=255) aaaaCACGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACt < 2:150090/150‑1 (MQ=255) acacGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGTTGGATTGCGACACGGAGTTACTTta < 4:299440/150‑1 (MQ=255) acacGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACTTta < 4:279308/150‑1 (MQ=255) acacGACCCGTAAACCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACTTta > 2:61223/1‑150 (MQ=255) acGACCCGTAACCCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGATTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACTTtata > 1:810747/1‑150 (MQ=255) | GTGCCTCCTGCGGCTTCAACTGACGGTCGGTAAACCCGGCCTGATATATCACCTTCCAGAAGCGATTTGCCGGATGAGCAAAGGGAAAACCAGTCCCGGCGGATGAAAGCCCAGGGTTGATACCGCAAAACACGACCCGTAACCCTGGAGCCAAAATATCCTCAACCATATTTACTCCTTTCTAACATCACCAGGAAAAGTATAACGGATTGAAAATACATTGTTTATAAAAACAGCAGGCGCGCGGTAATGGCTGGATTGCGACACGGAGTTACTTTATA > NC_000913_3_pae_tpiA/3215305‑3215585 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |