mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 332 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 22 (0.260) | 30 (0.400) | 29/240 | 3.2 | 52.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 35 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 64 (0.750) | 16 (0.200) | 15/254 | 7.2 | 19.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 72 (0.900) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 68 (0.790) | 16 (0.200) | 15/254 | 7.2 | 19.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 72 (0.900) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 2976108 = | 97 (1.130) | 12 (0.150) | 11/254 | 8.8 | 11.9% | noncoding (82/88 nt) | omrA | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| ? | NC_000913_3_pae_tpiA | 2976130 = | 87 (1.090) | noncoding (60/88 nt) | omrA | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 3439574 = | 95 (1.110) | 10 (0.130) | 10/244 | 8.9 | 10.8% | intergenic (‑65/+42) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| ? | NC_000913_3_pae_tpiA | 3439604 = | 80 (1.040) | intergenic (‑95/+12) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4171541 | 53 (0.620) | 13 (0.160) | 11/260 | 9.0 | 20.4% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913_3_pae_tpiA | = 4212920 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3547920 | 100 (1.170) | 11 (0.140) | 9/244 | 9.4 | 10.9% | noncoding (34/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 3547936 | NA (NA) | noncoding (50/87 nt) | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3046069 | 82 (0.960) | 10 (0.120) | 10/262 | 9.5 | 8.9% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_tpiA | 4070457 = | 126 (1.530) | intergenic (‑56/+58) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3046069 | 82 (0.960) | 10 (0.120) | 10/262 | 9.5 | 10.6% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_tpiA | = 3504887 | 90 (1.090) | intergenic (+104/+48) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3046069 | 82 (0.960) | 10 (0.120) | 10/262 | 9.5 | 10.5% | intergenic (‑168/+99) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_tpiA | = 3046082 | 91 (1.100) | intergenic (‑181/+86) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||