| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3950444 = | 18 (0.720) | 4 (0.170) | 4/270 | 2.7 | 17.3% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 3950470 = | 21 (0.890) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGG > NC_000913_3_pae_tpiA/3950296‑3950577 | aaacggtgttcacaccctgtgcccgcaacgcatgtaccacccactgtgcgccattcatagttagttccccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaa > 1:112493‑M1/149‑149 (MQ=255) acggtgttcacaccctgtgcccgcaacgcatgtaccacccactgtgcgccattcatagttagttccccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaAcc > 2:374054‑M1/147‑149 (MQ=255) ttcacaccctgtgcccgcaacgcatgtaccacccactgtgcgccattcatagttagttccccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCa < 2:206263‑M1/9‑1 (MQ=255) cAAAATGACAGCCCTTCTACGAGTGAGTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCggg < 2:205962/149‑1 (MQ=255) tACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa > 2:291651/1‑149 (MQ=255) aTTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑a > 1:367413/1‑149 (MQ=255) gtggTGATTAGCGGGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACCAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCgaggag < 2:177174/146‑1 (MQ=255) agttagttccccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCa > 1:206263‑M1/91‑149 (MQ=255) gTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAAAAT‑AAACAAGGAGAAg > 1:63901/1‑149 (MQ=255) tggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACa < 2:260130/149‑1 (MQ=255) tggtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACa < 2:38468/149‑1 (MQ=255) gtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AGCCGGGGAGCAGACAATGAATaagatc > 1:391592/1‑145 (MQ=255) gtgATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGc > 1:15221/1‑149 (MQ=255) gaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGtttttt > 1:110187‑M1/74‑104 (MQ=255) gaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGtttttt < 2:110187‑M1/31‑1 (MQ=255) gATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACACCTGCACCGAAAGGTCCGGGGGAAAGCGCGGAGGTTAAAAACATAAACCGAAG‑GGAGACAATGAATAACAGcac > 1:308569/1‑149 (MQ=255) cTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCa < 2:367413/149‑1 (MQ=255) aaaGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaactaact > 1:291967/1‑149 (MQ=255) aGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTAt < 1:307465/149‑1 (MQ=255) agaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGgcg > 1:255469/1‑149 (MQ=255) gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTg > 1:356084/1‑56 (MQ=255) gaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTg < 2:356084/56‑1 (MQ=255) aaGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATAGCGcacac > 2:248867/1‑148 (MQ=255) ccTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAgtgg < 1:291651/149‑1 (MQ=255) | TCGAACAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACAT‑AACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGG > NC_000913_3_pae_tpiA/3950296‑3950577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |