New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 416275591 (3.660)3 (0.130) 3/270 3.1 3.4% coding (432/1101 nt) trmA tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase
?NC_000913_3_pae_tpiA = 4162765 85 (3.600)coding (422/1101 nt) trmA tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAA  >  NC_000913_3_pae_tpiA/4162619‑4162912
                                                                                                                                                  |                                                                                                                                                   
gggTAAAGCTGTTTTCCACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCAATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATAAGAAACCCATTCAGATTCTGCGCGCGCAGTGCATcg                                                                                                                                                   <  1:417692/149‑1 (MQ=255)
   tAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATTAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCgcgc                                                                                                                                                >  1:81158/1‑149 (MQ=255)
   tAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCCGATGCACATTCAGATTCTGCGCGCGCAGTGCATCgcgc                                                                                                                                                >  2:222251/1‑149 (MQ=255)
    aaaGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCa                                                                                                                                               <  1:246625/149‑1 (MQ=255)
    aaaGCTGTTTTCTACCTGACGGTAGATCAGCTCTGTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCa                                                                                                                                               <  2:79920/149‑1 (MQ=255)
    aaaGCTGTTTTCTACCTGAACGGATAGCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCa                                                                                                                                               <  2:402028/149‑1 (MQ=255)
     aaGCTGTTTTCTACCTGACGGTAGTTCATCTCTGTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAg                                                                                                                                              <  2:109485/149‑1 (MQ=255)
           ttttCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTc                                                                                                                                        >  2:226447/1‑149 (MQ=255)
                   cTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTAAGATTCTGCGCGCGCGGTGCATCGCGCAGGGCCTCCGCTTCCt                                                                                                                                >  1:6148/1‑149 (MQ=255)
                     gACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                                              >  2:291984/1‑149 (MQ=255)
                      aCGGAAGACCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTCATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGAc                                                                                                                             <  1:20656/149‑1 (MQ=255)
                        ggTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGc                                                                                                                           >  1:153028/1‑149 (MQ=255)
                        ggTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCACGGGACATCGCGCAGTGCCTCCGCTTTCTGACGc                                                                                                                           >  1:99743/1‑149 (MQ=255)
                        ggTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATAGATGTACTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGTGCAGGGCCTTCGCTTCCTGgcgc                                                                                                                           >  2:16241/1‑149 (MQ=255)
                         gTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGcc                                                                                                                          >  1:58897/1‑149 (MQ=255)
                          tAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCa                                                                                                                         >  1:188588/1‑149 (MQ=255)
                            gATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACt                                                                                                                       >  1:400568/1‑149 (MQ=255)
                            gATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACt                                                                                                                       >  1:212116/1‑149 (MQ=255)
                             atcatcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTGATCCTGATCCAGCTCGATTTTGTGTTTCTTTGCCCGACCAATCAGATTCCCCTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGGCGCCCCtc                                                                                                                      >  2:576/1‑149 (MQ=255)
                             atcatcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGACCTCCGCTTCCTGACGCCACtc                                                                                                                      >  1:159764/1‑149 (MQ=255)
                             atcatcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCACCCGCAGTACATCGCGCGGGGCCTCCGCTTCCTGACGCCACtc                                                                                                                      >  1:328323/1‑149 (MQ=255)
                              tcatcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtca                                                                                                                     >  1:258651/1‑149 (MQ=255)
                               catcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcat                                                                                                                    >  2:341973/1‑149 (MQ=255)
                               catcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcat                                                                                                                    <  1:54050/149‑1 (MQ=255)
                                atcTCTTTCCCTGCGACCGGTAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcatc                                                                                                                   <  1:90436/149‑1 (MQ=255)
                                atcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcatc                                                                                                                   <  1:409094/149‑1 (MQ=255)
                                 tctcTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcatca                                                                                                                  >  2:51633/1‑149 (MQ=255)
                                   tctTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCatcatc                                                                                                                <  2:382786/149‑1 (MQ=255)
                                   tctTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCatcatc                                                                                                                <  1:226447/149‑1 (MQ=255)
                                      ttCCGTGCTAACGGCAGTCGTTCATGGATCTAATCCTGATCCAGCTCGATTTTGGTTTTTCATGCACGGCCAGACGGGTTCACTTTCAGATTCTGTGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAg                                                                                                             <  2:362900/149‑1 (MQ=255)
                                      ttCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAg                                                                                                             <  1:270527/149‑1 (MQ=255)
                                      ttCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGAGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAg                                                                                                             <  1:190037/149‑1 (MQ=255)
                                       tCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGc                                                                                                            >  1:123111/1‑149 (MQ=255)
                                        cccTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGct                                                                                                           >  1:233995/1‑149 (MQ=255)
                                          cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc                                                                                                         <  1:103750/149‑1 (MQ=255)
                                          cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc                                                                                                         >  2:242793/1‑149 (MQ=255)
                                          cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTGTGTTTTCGTTGCCCGACCAAGCAGAGGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc                                                                                                         <  2:115882/149‑1 (MQ=255)
                                           tGCGACCGGCAGACGTTCATCGCTCTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttct                                                                                                        >  1:84329/1‑149 (MQ=255)
                                            gCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttctt                                                                                                       <  2:123111/149‑1 (MQ=255)
                                                     aGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGGCGCCACTCATCACTCGGCTCCTTCTGGTATAg                                                                                              >  1:31842/1‑149 (MQ=255)
                                                     aGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAg                                                                                              >  1:382191/1‑149 (MQ=255)
                                                     aGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAg                                                                                              <  2:153028/149‑1 (MQ=255)
                                                     aGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTCCTTATGGTATAg                                                                                              >  1:295540/1‑149 (MQ=255)
                                                     aGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTAGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAg                                                                                              >  2:72482/1‑149 (MQ=255)
                                                         gTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                                          <  1:51633/149‑1 (MQ=255)
                                                         gTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                                          <  2:382191/149‑1 (MQ=255)
                                                         gTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCAATCACTGGCCTCTTCCTGACGCCCCCCATCCTCCAGCTTCTTCTCGTATAGCAgg                                                                                          >  1:12222/1‑149 (MQ=255)
                                                         gTTCATCGATGTAACCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                                          <  1:50559/149‑1 (MQ=255)
                                                         gTTCATCGATGGAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                                          <  1:232309/149‑1 (MQ=255)
                                                           tCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGa                                                                                        <  2:400568/149‑1 (MQ=255)
                                                             aTCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGCCCAATCAGATGCACATTCAGAATCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGaaa                                                                                      >  2:229189/1‑149 (MQ=255)
                                                             aTCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGaaa                                                                                      >  1:19897/1‑149 (MQ=255)
                                                                  tGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCCCTCATCATCCAGCTTCTTATGGTATAGCAGGGCAaccacc                                                                                 >  1:150513/1‑149 (MQ=255)
                                                                      acccTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCt                                                                             <  2:19897/147‑1 (MQ=255)
                                                                        gctgttacAGCTGGATTTTGGTTGTCGTTTCCCGATCAATCAGAGGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGTCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGa                                                                           <  2:29880/142‑1 (MQ=255)
                                                                         cTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGAt                                                                          <  2:58897/149‑1 (MQ=255)
                                                                           aacgcAGCGCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTa                                                                        <  2:212116/145‑1 (MQ=255)
                                                                             tCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTGTAGCAGGGAAACCACCGCCTGATTACt                                                                      <  2:261050/149‑1 (MQ=255)
                                                                             tCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACt                                                                      <  2:233995/149‑1 (MQ=255)
                                                                                  cTCGATTTTGGTTTTCGTTGCCCGACCAATCAGTTGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGTCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTCTGGTATAGCAGTGAAACCACCGCCTGATTACTCAgtg                                                                 <  1:128773/149‑1 (MQ=255)
                                                                                  cTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGCTTATTCTgtt                                                                 >  1:391789/1‑148 (MQ=255)
                                                                                   tCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCGGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAgggt                                                                >  1:11049/1‑149 (MQ=255)
                                                                                       ttttGGTTTTCGTTGACCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCCCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACAGCCTCATTACTCACTGTAGTg                                                            >  2:156974/1‑149 (MQ=255)
                                                                                         ttgttgttCGTTGCCCGGCCAATCAGATGCACATTCGGATTCTGCGCGCGCAGCGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCGTATGGTATAGCAGGGAAACCACCGCCTGATGACTCAGTGTAGTGAg                                                          <  2:154447/143‑1 (MQ=255)
                                                                                             ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaa                                                      >  1:175322/1‑149 (MQ=255)
                                                                                             ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaa                                                      <  1:242793/149‑1 (MQ=255)
                                                                                             tcctccatGCCCGACCAATCAAATGCACATACAGATTCCGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACCCCACTCATCATCCAGCTTCTTATGGCAGATCAGGAAAACCACCGCCTGATTACTCAGTGTAGTGAGGTaa                                                      <  1:16241/142‑1 (MQ=255)
                                                                                                  gTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                                              <  2:387537/72‑1 (MQ=255)
                                                                                                  gTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                                              >  1:387537/1‑72 (MQ=255)
                                                                                                    tGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGACACCATTACGGTAGTACTCAGTGTAGTGAGGTAATCAATCt                                               <  1:314175/149‑1 (MQ=255)
                                                                                                    ggCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCt                                               <  1:222251/148‑1 (MQ=255)
                                                                                                     gCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTg                                              <  1:72482/149‑1 (MQ=255)
                                                                                                        cGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGaa                                           <  2:175322/149‑1 (MQ=255)
                                                                                                            cAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGaacaac                                       <  2:188588/149‑1 (MQ=255)
                                                                                                             aaTCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGGGTAGTGAGGTAATCAATCTGGAACACCt                                      >  1:71490/1‑149 (MQ=255)
                                                                                                              aTCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACt                                                                      >  1:221607/1‑116 (MQ=255)
                                                                                                              aTCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACt                                                                      <  2:221607/116‑1 (MQ=255)
                                                                                                               tgaGATGCACGTTGAGATTCTGTGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTtg                                    <  2:185003/147‑1 (MQ=255)
                                                                                                               tCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGGAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTtg                                    <  2:376794/149‑1 (MQ=255)
                                                                                                                cAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTtgt                                   <  1:417858/149‑1 (MQ=255)
                                                                                                                 aGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTtgtg                                  <  1:291984/149‑1 (MQ=255)
                                                                                                                   aTGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGgc                                <  1:341973/149‑1 (MQ=255)
                                                                                                                       acaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTTAGGTAATCAATCTGGAACAACTTGTTgcgccg                            >  2:405459/1‑147 (MQ=255)
                                                                                                                       acaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAg                            >  1:352100/1‑149 (MQ=255)
                                                                                                                       acaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATATGGAACAACTTGTGGCGCAg                            >  1:118359/1‑149 (MQ=255)
                                                                                                                         aTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTGATCAATCTGGGACAACTTGTGGCGCAGaa                          >  1:67153/1‑149 (MQ=255)
                                                                                                                             aGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGGCGCCACTCATCATCCACCTTCTTATGGGATAGCAGGCAACCCACCGCCTGATTACTCAGAGTAGTGCGGTAATCAAACTCGACCAACTACTGCCGCAGAACggc                      >  2:227744/1‑148 (MQ=255)
                                                                                                                              gATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGa                     <  1:178938/149‑1 (MQ=255)
                                                                                                                                          gcAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTAATCAATGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGcaca         >  1:21396/1‑149 (MQ=255)
                                                                                                                                           cAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCGCTCATCATCCAGCTTCTTATGGTATAGCAGGGCAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGccgcc        >  1:202029/1‑145 (MQ=255)
                                                                                                                                             gTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTCTAGCAGGGAAACCACCGCCTGATTCCTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTCTGGCGCAGAACGGGATTATTACACACAccc      >  2:372623/1‑149 (MQ=255)
                                                                                                                                                 aTCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCaa  <  1:26752/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
GGGTAAAGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAA  >  NC_000913_3_pae_tpiA/4162619‑4162912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.