| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_tpiA | 1,456,944 | Δ128,366 bp | [paaE]–[ydeP] | 116 genes [paaE], paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD1, insC1, ydbA, insI1, ydbA, ydbC, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, gapC, gapC, cybB, rydC, ydcA, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insP, insQ, ydcO, ydcN, ydcP, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ydcX, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncI, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddK, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA, sra, bdm, osmC, ddpF, ddpD, ddpC, ddpB, ddpA, ddpX, dosP, dosC, yddW, gadC, gadB, pqqL, yddB, yddA, ydeM, ydeN, ydeO, safA, [ydeP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_tpiA | 1456944 | 1585309 | 128366 | 28 [0] | [0] 28 | [paaE]–[ydeP] | [paaE],paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD1,insC1,ydbA,insI1,ydbA,ydbC,ydbD,ynbA,ynbB,ynbC,ynbD,azoR,hrpA,ydcF,aldA,gapC,gapC,cybB,rydC,ydcA,hokB,mokB,sokB,trg,ydcI,ydcJ,opgD,ydcH,rimL,ydcK,tehA,tehB,ydcL,insP,insQ,ydcO,ydcN,ydcP,yncJ,hicA,hicB,ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ydcX,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncI,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddK,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA,sra,bdm,osmC,ddpF,ddpD,ddpC,ddpB,ddpA,ddpX,dosP,dosC,yddW,gadC,gadB,pqqL,yddB,yddA,ydeM,ydeN,ydeO,safA,[ydeP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1456943 | 0 (0.000) | 28 (1.130) | 25/284 | 0.1 | 100% | coding (514/1071 nt) | paaE | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| ? | NC_000913_3_pae_tpiA | 1585310 = | 0 (0.000) | coding (1177/2280 nt) | ydeP | putative oxidoreductase | |||||
ATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTG > NC_000913_3_pae_tpiA/1456799‑1457076 | aTTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaat > 1:165297‑M1/1‑145 (MQ=255) cGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCCGCGTTcaatgcta > 2:241509‑M1/1‑141 (MQ=255) gCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttac > 2:254385‑M1/1‑140 (MQ=255) cAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacct > 2:384935‑M1/1‑138 (MQ=255) cGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaac < 1:253552‑M1/149‑21 (MQ=255) ggttatCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaaca < 2:134667‑M1/147‑22 (MQ=255) aTTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacag > 2:395276‑M1/1‑127 (MQ=255) cTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt < 2:165297‑M1/149‑36 (MQ=255) aaaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt > 1:20586‑M1/1‑108 (MQ=255) aaaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt < 2:20586‑M1/143‑36 (MQ=255) aaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgta < 1:254385‑M1/149‑43 (MQ=255) gAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgtt > 2:419736‑M1/1‑103 (MQ=255) ttCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttaccttt > 1:123198‑M1/1‑88 (MQ=255) ttCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttaccttt < 2:123198‑M1/101‑14 (MQ=255) cccTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgc > 1:399078‑M1/1‑84 (MQ=255) ccTGATCTACGGCAACCGTACCAGCTCGAGCAGGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCATCGTTcaatgttacctttcatcaacagcagattgaccaggtgctgtacgttctgggtaccatgttcgtgct < 1:149009‑M1/149‑67 (MQ=255) gATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgag < 1:64605‑M1/149‑70 (MQ=255) cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACTAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattcc < 2:111892‑M1/149‑83 (MQ=255) cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattcc > 1:77327‑M1/1‑67 (MQ=255) cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgatcgtgctgagtgatccccattcc > 2:207721‑M1/1‑67 (MQ=255) gatgTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgc < 1:395276‑M1/149‑100 (MQ=255) tttCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtactttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttc < 2:224522‑M1/149‑104 (MQ=255) gCCAGGCACTGGCAGACCTGAAAGACAAATATCCTAAACGTTcaatgttacctttcatcaacagcagattgaccattggctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggca > 2:296276‑M1/1‑42 (MQ=255) aCTGGCAGACCTGAAAGACAAATATCCTCAGCGATcaatgttacctttcatcaacagcagattgaccagttgctctacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggccgcggcct > 2:75732‑M1/1‑35 (MQ=255) cTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgtgtaccatgttcgtgctgagtgatccccattccggaatagataatggtgcgttcggcagcggcata > 1:216927‑M1/1‑34 (MQ=255) aaaGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgggctgagtgagccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtcagccag > 2:319575‑M1/1‑22 (MQ=255) gACAAATATCCTCAGCGTTtaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtgagccagtgc < 2:408966‑M1/149‑131 (MQ=255) aaaTATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtcagccagttcggc > 2:348325‑M1/1‑16 (MQ=255) | ATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTG > NC_000913_3_pae_tpiA/1456799‑1457076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |