New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1160059	43 (1.180)	4 (0.110)	4/272	4.6	8.9%	coding (1493/2190 nt)	fhuE	ferric‑rhodotorulic acid outer membrane transporter
	?	NC_000913_3_pae_tpiA	= 1160079	40 (1.130)					coding (1473/2190 nt)	fhuE	ferric‑rhodotorulic acid outer membrane transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCCAGCTCGTAGTTGTTACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCATATGTGTGGTATCGTC  >  NC_000913_3_pae_tpiA/1159932‑1160213                                                                                                                                                    |                                                                                                                                       aCCCAGCTCGTAGTTGTTACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCgtggtgt                                                                                                                                       <  2:159329/149‑1 (MQ=255) aCCCAGCTCGTAGTTGTTACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCgtggtgt                                                                                                                                       >  1:260155/1‑149 (MQ=255)     aGCTCGTAGTTGTTACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGtt                                                                                                                                   >  2:320685/1‑149 (MQ=255)          gTAGTGGTTACCGGTGATTGGAGCCAGATATGTGCCTGAACTGTCACGATCATTTTGCGTCTGGAAAATAGAGGTATAGCTGACGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTtct                                                                                                                              <  2:484129/149‑1 (MQ=255)             gttgttACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCa                                                                                                                           <  2:260155/149‑1 (MQ=255)               tgttACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATg                                                                                                                         <  1:320685/149‑1 (MQ=255)                 ttACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCTTCTGTAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCt                                                                                                                       >  1:347226/1‑149 (MQ=255)                   aCCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACAACAGAACAGCGTAAGGCGATGTGTGGTTTTTCTCCATGCCGt                                                                                                                     >  2:519971/1‑149 (MQ=255)                      ggTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAg                                                                                                                  >  2:45007/1‑149 (MQ=255)                               aGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAACGTAAGGCGTGGTGTGGTGTTTCTCCATGCTGTAAATCAGCGTAt                                                                                                         >  1:105749/1‑149 (MQ=255)                                   aGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAAc                                                                                                     <  1:264557/149‑1 (MQ=255)                                        tttGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTGTCCATGCTGTAAGTCAGCGTATCAACCCGcc                                                                                                >  1:402706/1‑149 (MQ=255)                                             cTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTtc                                                                                                                               <  2:19163/113‑1 (MQ=255)                                             cTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTtc                                                                                                                               >  1:19163/1‑113 (MQ=255)                                             cTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTg                                                                                           <  1:488728/149‑1 (MQ=255)                                                    gTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAAc                                                                                    <  1:482497/149‑1 (MQ=255)                                                         gATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTgcg                                                                               >  2:565646/1‑149 (MQ=255)                                                                  gCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATc                                                                      <  1:272289/149‑1 (MQ=255)                                                                     gcgggAAAATAGAGGGATAGCTGGCGTAGGCCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGa                                                                   <  1:108134/146‑1 (MQ=255)                                                                         gAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCa                                                               >  1:515905/1‑149 (MQ=255)                                                                              tAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGa                                                          <  2:336279/149‑1 (MQ=255)                                                                                   ggataGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGc                                                     >  2:590899/3‑149 (MQ=255)                                                                                       aGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGa                                                                           >  2:356588/1‑123 (MQ=255)                                                                                       aGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGa                                                                           <  1:356588/123‑1 (MQ=255)                                                                                        ggtGGGGTGGGTTGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAggg                                                <  2:99231/147‑1 (MQ=255)                                                                                         cTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGt                                               <  1:590899/149‑1 (MQ=255)                                                                                                 ggTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAg                                       <  1:45007/149‑1 (MQ=255)                                                                                                           ttGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGt                                               <  2:254678/131‑1 (MQ=255)                                                                                                           ttGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGt                                               >  1:254678/1‑131 (MQ=255)                                                                                                              tCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGCGTGGCAGCAGATaa                          >  1:434924/1‑149 (MQ=255)                                                                                                                    aTGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGAttt                    <  2:402706/149‑1 (MQ=255)                                                                                                                     tGTCAAACACCGGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTc                   >  1:395746/1‑149 (MQ=255)                                                                                                                       tCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCat                 >  2:406744/1‑149 (MQ=255)                                                                                                                        cAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAAc                         >  1:113762/1‑140 (MQ=255)                                                                                                                        cAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAAc                         <  2:113762/140‑1 (MQ=255)                                                                                                                        cAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACCATTTCata                >  2:490553/1‑149 (MQ=255)                                                                                                                            cacCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCATAtgtg            <  2:398661/149‑1 (MQ=255)                                                                                                                              ccagacccgCGGAAGGCGTGCCGCTGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGACCAGATGCAGCGGATCGGCAAGTGTGACACGCGTGGCAGCATACAACGATTTCATAtgtctg          <  2:575627/149‑1 (MQ=255)                                                                                                                                           aGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCATATGTGTGGTATCGTc  <  1:211498/144‑1 (MQ=255)                                                                                                                                           aGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCATATGTGTGGTATCGTc  >  2:211498/1‑144 (MQ=255)                                                                                                                                               gtggtgtggtTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACg                                         <  2:494428/101‑1 (MQ=255)                                                                                                                                               gtggtgtggtTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACg                                         >  1:494428/1‑101 (MQ=255)                                                                                                                                                    |                                                                                                                                       ACCCAGCTCGTAGTTGTTACCGGTGATTGGAGCCAGATATTTGCCTGAACTGTCACGATCATTTTGCGGCTGGAAAATAGAGGTATAGCTGGCGTAGGTCGACCAGTTGTCATTGATGTCAAACACCAGACCAGCGTAAGGCGTGGTGTGGTTTTTCTCCATGCTGTAAGTCAGCGTATCAACCCGCCAGTTGGTATAACGTGCGCCGAGGATCAGATGCAGCGGATCGGCAAGGGTGACACGAGTGGCAGCATATAACGATTTCATATGTGTGGTATCGTC  >  NC_000913_3_pae_tpiA/1159932‑1160213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.