New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 368207446 (1.370)5 (0.160) 5/266 3.6 10.0% intergenic (‑134/+87) yhjJ/dctA putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter
?NC_000913_3_pae_tpiA = 3682087 47 (1.480)intergenic (‑147/+74) yhjJ/dctA putative periplasmic M16 family chaperone/C4‑dicarboxylic acid, orotate and citrate transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCCCTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCC  >  NC_000913_3_pae_tpiA/3681930‑3682218
                                                                                                                                                 |                                                                                                                                                
gtgCCCTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCAccc                                                                                                                                             <  1:243609/150‑1 (MQ=255)
  gCCCTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAg                                                                                                                                           >  2:157906/1‑150 (MQ=255)
     cTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCATTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAggtg                                                                                                                                        >  1:36845/1‑150 (MQ=255)
     cTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAggtg                                                                                                                                        >  1:101806/1‑150 (MQ=255)
             gAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTc                                                                                                                                <  2:161300/150‑1 (MQ=255)
               aCCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAg                                                                                                                              >  2:382803/1‑150 (MQ=255)
                ccccTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAgg                                                                                                                             <  1:277942/150‑1 (MQ=255)
                 cccTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGc                                                                                                                            >  2:297545/1‑150 (MQ=255)
                 cccTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAAAGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACAGGAAAATGTCACGGGCGA‑AGTGCAATAACCCTGGACTCACGCAGGTGGGAGGTTTAgcc                                                                                                                            >  1:57636/1‑148 (MQ=255)
                       ccAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAACACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAggg                                                                                                                      <  1:24706/149‑1 (MQ=255)
                            tATCCTGGGAATAAAAAAACTGCCCGTTGTCGGTCAGTCACAATGGCGTTAAAAACACTACGGGTTAGACCGCAAGAACATGAAAATGTCACGGAGGA‑ACGGACGACAACCTGAACTCACAAAGGCGGTAGCATCAGCCACAgggctaac                                                                                                                 >  2:348357/1‑145 (MQ=255)
                                cTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAAt                                                                                                                >  2:580643/1‑147 (MQ=255)
                                cTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAAt                                                                                                                <  1:580643/147‑1 (MQ=255)
                                cTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTAt                                                                                                             >  1:352530/1‑150 (MQ=255)
                                cTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGGCAATGAt                                                                                                             >  1:352132/1‑150 (MQ=255)
                                 tGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATg                                                                                                            >  1:449627/1‑150 (MQ=255)
                                  ggTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATgc                                                                                                           >  1:546877/1‑150 (MQ=255)
                                     aataaAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGAGAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAAATCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCa                                                                                                        >  2:503991/1‑150 (MQ=255)
                                                         tCGGTCAGTCTAAATGAGGTTAGGAACACTTCGTGTTACCCAGCAAGAACATAAAAAAG‑ATCGGAAGAGAGTGGTGTAGACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGAGAAg                                                                                    >  2:127648/1‑150 (MQ=255)
                                                                 tCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCTGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCg                                                                            >  1:527815/1‑150 (MQ=255)
                                                                 tCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGAAGTGCg                                                                            >  1:104507/1‑150 (MQ=255)
                                                                  ttAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCgg                                                                           <  2:439675/149‑1 (MQ=255)
                                                                  cTAAATGACGTTAAAAAGACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCgg                                                                           <  2:94569/150‑1 (MQ=255)
                                                                   tAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCggg                                                                          >  1:310093/1‑150 (MQ=255)
                                                                   aaaaTTACGTTAAAAACATTGCGGGATAGACCGCAAGAACATGAAAATGTGACGGAAGA‑AGTGAAATAAACCTGAACACACCCAGGTGGTAAGTTCAGGCACCGGACGCAAGTATGCGCAAACATCCGCACTCGGGGAAGGGAGTGCtgg                                                                          <  2:522368/149‑1 (MQ=255)
                                                                            ttAAAAACGCTTCGGGTTAGACCGCAAGAACATGAAAATGTCACCGAAGA‑AGTGAAATAAATCTGAACTCACCCAGGTGGTAAGTTCAGGCAGAGGGGTCAATTATGCGCAAACTCCCGCACTCGGGGAAGGGAGTGCGGTCATAAGtga                                                                 <  2:138988/150‑1 (MQ=255)
                                                                            ttAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAATGCGGGCATAAGtga                                                                 >  1:419836/1‑150 (MQ=255)
                                                                                  acacTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGAt                                                           <  2:292584/150‑1 (MQ=255)
                                                                                   cacTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGAtt                                                          <  1:378480/150‑1 (MQ=255)
                                                                                      ttCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGTGGTAAATTATGCGCAAACACCCGCACTCGTGGAGGGGAGTGCGGGCATCAGTGGTGAGATTaaa                                                       >  2:278076/1‑149 (MQ=255)
                                                                                      ttCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAACCACCCGCACTCGGGGAAGGGAGTGGGGGACTAAGTGATGAGATTaaa                                                       >  1:368658/1‑149 (MQ=255)
                                                                                            ttAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGAt                                                  <  2:4554/149‑1 (MQ=255)
                                                                                            ttAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGAt                                                  >  1:4554/1‑149 (MQ=255)
                                                                                               gACCGCAAGAACATGAAAAGGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGGGGTAAGTTCAGGCACAGGGGTCAATAATACGCAAACACCCGCACTCGGGGAAGGGAAGACGGGCATAAGTGATGAGATTAAGAGGATAAtt                                              >  1:533451/1‑150 (MQ=255)
                                                                                                  cGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGATGGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGt                                           <  2:546877/150‑1 (MQ=255)
                                                                                                   gCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTg                                          <  1:157906/150‑1 (MQ=255)
                                                                                                       gAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGtt                                      <  1:50247/150‑1 (MQ=255)
                                                                                                         aCATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGtttt                                    <  2:436710/150‑1 (MQ=255)
                                                                                                           aTGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAGACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGttttca                                  >  2:173019/1‑148 (MQ=255)
                                                                                                                    tCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGgcg                         >  1:173176/1‑150 (MQ=255)
                                                                                                                      aCGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACACGGGTCAATTAGGCGCAAACACCCGCACTCGGGGAAGGGAGGGCGGGCATAAGTGATGAGAGTAAGAGGATAATTCGTGCGTTTTTCCATCcgccgcc                       >  1:294226/1‑149 (MQ=255)
                                                                                                                         gaaga‑aGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGCGCGCAACAGGTTAATTCGTGCGTTTTGCCATCCGGCGCACgc                    >  1:316255/1‑149 (MQ=255)
                                                                                                                            ga‑agGGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCAGTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCTCACgtgtt                 <  2:284797/150‑5 (MQ=255)
                                                                                                                                    aaTAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGca          <  2:564628/150‑1 (MQ=255)
                                                                                                                                           cTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGAAAACACCCGCACTCGGGGAAGGGAGTACGGGCATAAGTGATGAGATTAAGAGGATAATTCGTACGTTTTGCTATCCAGCGCAAGATTATTCAGCACATCGTc   >  2:462099/1‑150 (MQ=255)
                                                                                                                                            tGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTcc  <  2:36845/150‑1 (MQ=255)
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GTGCCCTGCATGTGAACCCCTGATCAACTATCCTGGTAATAAAAAAACTGCCCGTTGTCGGTCAGTCTAAATGACGTTAAAAACACTTCGTGTTAGACCGCAAGAACATGAAAATGTCACGGAAGA‑AGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCC  >  NC_000913_3_pae_tpiA/3681930‑3682218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.