New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3876102 =	41 (1.220)	5 (0.160)	5/262	3.5	12.5%	intergenic (+8/+38)	yidX/yidA	putative lipoprotein/sugar phosphate phosphatase
	?	NC_000913_3_pae_tpiA	3876133 =	32 (1.030)					intergenic (+39/+7)	yidX/yidA	putative lipoprotein/sugar phosphate phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATC  >  NC_000913_3_pae_tpiA/3875953‑3876245                                                                                                                                                      |                                                                                                                                                atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCTTTACTGCACCGCTGCAATTTCTGGTTGTAAATGCAGTAAACCAATAATCAGTAAg                                                                                                                                                 >  1:551210/1‑150 (MQ=255)  tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGc                                                                                                                                                >  1:194581/1‑150 (MQ=255)  attAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCCGTGACTGTTACGCGGGACATCATTACTGCACCGCTGCAAATTCTGGTTGTATATGCAGTAGACCAATAATCAGTAAGc                                                                                                                                                >  2:549173/2‑150 (MQ=255)            gATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAAcgg                                                                                                                                      >  2:375608/1‑149 (MQ=255)            gATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAAcgc                                                                                                                                      >  2:83589/1‑150 (MQ=255)            gATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAAcgc                                                                                                                                      >  1:88027/1‑150 (MQ=255)                  aTGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCAGTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTAt                                                                                                                                <  2:465775/150‑1 (MQ=255)                     aaTAGTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCt                                                                                                                             >  2:453776/1‑150 (MQ=255)                        aCTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGtt                                                                                                                          >  1:88945/1‑150 (MQ=255)                         cTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGttt                                                                                                                         <  2:323137/150‑1 (MQ=255)                           aTTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCTTTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAACCGCGTTTATGCTGTTTgc                                                                                                                       >  2:324903/1‑150 (MQ=255)                                          ttCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTaa                                                                                                        >  1:299550/1‑150 (MQ=255)                                                          cGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTAt                                                                                                                                >  2:176709/1‑110 (MQ=255)                                                          cGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTAt                                                                                                                                <  1:176709/110‑1 (MQ=255)                                                             agcaTTACCGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                     >  1:71292/1‑150 (MQ=255)                                                                 ttACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCCCAATAGc                                                                                 >  1:352558/1‑150 (MQ=255)                                                                     tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAac                                                                             <  2:88945/150‑1 (MQ=255)                                                                     tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAac                                                                             >  2:227032/1‑150 (MQ=255)                                                                               tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                     <  1:37044/132‑1 (MQ=255)                                                                               tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                     >  2:37044/1‑132 (MQ=255)                                                                               tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCAt                                                                   >  2:55316/1‑150 (MQ=255)                                                                                gTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc                                                                  >  2:551533/1‑150 (MQ=255)                                                                                         gACATCATGACTGCACCGCAGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTGAAGCTGTTTGCCCGCTCGCAGATTAAATCAGCACATACTTCTCAATAACTAACGTCACGCCATCTTCAAGGtt                                                         >  2:502863/1‑150 (MQ=255)                                                                                            atcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGa                                                      <  2:71292/150‑1 (MQ=255)                                                                                                 tACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTgg                                                 <  2:88027/150‑1 (MQ=255)                                                                                                  aCTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCTCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGt                                                <  1:83589/150‑1 (MQ=255)                                                                                                         cGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAg                                         >  1:373002/1‑150 (MQ=255)                                                                                                          gCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGt                                        >  2:417037/1‑150 (MQ=255)                                                                                                            ggCAATGTATGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGTGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATGAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTc                                      <  2:241671/149‑1 (MQ=255)                                                                                                              cAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTCATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCATGGTTAGATTTGGTGACAAAGTTCGc                                    <  1:453776/150‑1 (MQ=255)                                                                                                              cAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGc                                    <  1:339207/150‑1 (MQ=255)                                                                                                                aTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCa                                  >  2:111068/1‑150 (MQ=255)                                                                                                                       gTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCATACGCGTTTATGCTGATTGCCCGCCCACAGATTGATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCCCTTCttt                           <  1:549173/150‑1 (MQ=255)                                                                                                                         tGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACaaa                                          >  2:250067/1‑133 (MQ=255)                                                                                                                         tGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACaaa                                          <  1:250067/133‑1 (MQ=255)                                                                                                                                    tAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGTTGACAAAGTTCGCCACTTCTTTCACTTAAGGAATa              >  2:108724/1‑150 (MQ=255)                                                                                                                                      aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTCGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGCAGTAATAGc            >  2:392531/1‑150 (MQ=255)                                                                                                                                      aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGc            <  1:417037/150‑1 (MQ=255)                                                                                                                                      aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGc            <  1:18346/150‑1 (MQ=255)                                                                                                                                        ccAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTCATTCAGGACATACTTGTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCTCTTCTTTCACTGAAGGAAtcacgt          >  1:501661/1‑145 (MQ=255)                                                                                                                                                cAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTGCGTTCACTGAAGGAATAGCGTTATCCATc  <  1:443416/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                ATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATC  >  NC_000913_3_pae_tpiA/3875953‑3876245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.