New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2700550 =	25 (0.740)	4 (0.140)	4/244	3.7	14.9%	noncoding (31/77 nt)	ohsC	sRNA antisense regulator of shoB toxin
	?	NC_000913_3_pae_tpiA	2700601 =	24 (0.830)					intergenic (+5/+17)	ohsC/acpS	sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGC  >  NC_000913_3_pae_tpiA/2700452‑2700750                                                                                                                                                      |                                                                                                                                                      tCGAGTTTTTATGCTAAAGATAGCAAGTTGTTTGGATAAGATAAGTACCCTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAACATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACAAGTTCGCGGGGTTTACTGCTTaaa                                                                                                                                                       >  2:130946/1‑150 (MQ=255)              cgaaaGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAAGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACAAAGGATCTTTACTATATCGTCGGATTTACTTTTTAAAGAGAACGGtatta                                                                                                                                          >  2:568744/3‑150 (MQ=255)                 aaGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTAttt                                                                                                                                       >  2:287263/1‑150 (MQ=255)                   gATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGATTTTACTTTTTAAAGAGAACGGAATTAttttt                                                                                                                                     >  1:272130/1‑150 (MQ=255)                    aTTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTa                                                                                                                                    <  2:10506/150‑1 (MQ=255)                     ttGCCAATTGCTGATGAAAGATAAGAAAACCGTTCCATAATAGCTGTAGCTGAGGGTGCATGCTGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTaa                                                                                                                                   <  1:568744/150‑1 (MQ=255)                     ttGCAAGTTGCTTGTAAAAGCTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAACATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAACAGTTCGGGGGTTTTACTTTTTAAAGAGAAACGTATTAttttcac                                                                                                                                   >  2:12695/1‑147 (MQ=255)                            ttGCGTGTAAAAGATAAGTACACTGATCCATAACCGCTGTTGTTGAGGGTGCATGCGGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaa                                                                                                                            <  1:345891/150‑1 (MQ=255)                                ttGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGCTCCGGGGTGTGACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaataat                                                                                                                        >  1:492599/1‑150 (MQ=255)                                             gTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGAACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACaa                                                                                                           <  2:2186/150‑1 (MQ=255)                                                        cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCg                                                                                                <  1:10710/150‑1 (MQ=255)                                                               gCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTGTGAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCt                                                                                         <  1:412811/150‑1 (MQ=255)                                                                                aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa                                                                               <  1:446279/143‑1 (MQ=255)                                                                                aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa                                                                               >  2:446279/1‑143 (MQ=255)                                                                                         aaaaTTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                                                                                                                  >  2:565910/1‑83 (MQ=255)                                                                                         aaaaTTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                                                                                                                  <  1:565910/83‑1 (MQ=255)                                                                                            aTTAAAGTTAAAAAGTAAACGCCCCTTTCCTTAGCATTTGGGGTGGTTTACTTTTTAAAGAGAACTTTATTAGTTTTAACTTTCAATGATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGcc                                                            <  2:525082/150‑1 (MQ=255)                                                                                                     aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTc                                                   <  1:287263/150‑1 (MQ=255)                                                                                                     aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTc                                                   >  1:267620/1‑150 (MQ=255)                                                                                                       aaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCg                                                 >  2:546304/1‑150 (MQ=255)                                                                                                                 ccccGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTaa                                       <  1:148439/150‑1 (MQ=255)                                                                                                                  cccGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAAt                                      <  1:34866/150‑1 (MQ=255)                                                                                                                          ttACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCACCGCCCAGCTTTTCCGCCCGTTTTAATGCCTCGcc                              >  1:335628/1‑150 (MQ=255)                                                                                                                               atttCGGGGTTTTTACTTTTTAAATAGAACCGTATTACTTTTAACGTTCAATAATTACCGTAGCAAAAGCATCGTGCCGCTCATCTGCCAGCGCTACATGCATATTTGCAACGCCTAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAta                         <  2:332867/148‑1 (MQ=255)                                                                                                                                    gggggTTTTACTTGTTAAAGAGAACGATATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtagccgt                    >  1:488787/1‑150 (MQ=255)                                                                                                                                      gggTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtcgccgtag                  >  1:323971/1‑150 (MQ=255)                                                                                                                                         ttttACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCAtagccgtagccg               >  2:474558/1‑150 (MQ=255)                                                                                                                                          tttACTTTTTAAAGAGAACGGTATTAGTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGCCACATGCATATTTGCAACGCGCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATagccgtagccgt              <  1:536554/150‑1 (MQ=255)                                                                                                                                               tttttAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGttt         >  1:538082/1‑150 (MQ=255)                                                                                                                                                     aaGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAg   <  1:34292/150‑1 (MQ=255)                                                                                                                                                     aaGAGAACGGTATTATTCTTAACTTTCAAGACGTACCGTGGCACAAGCATAGTGCCGCGCATCTGCCAGGGTTACACTCATATTTGCAACGCCCAGTTTTTCCGCCAGTTTTAATGGCTCGCCCCATAGCCGTAGCCGTGGTTGGCCGac   <  2:322874/150‑2 (MQ=255)                                                                                                                                                      agagAACGGTATTATTTTTAACTTTCACTAATTACCGTGACACAAGCATAGTGCCGCTCATCTGCCCGCGTTACATGCATATTTGCCACGCCAAGGTGTCTGGCCATGGTTAATGCCTCGCCTCTTGGCCGTAGCCGTGTTTTGCCGAGc  >  1:288661/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATGCATATTTGCAACGCCCAGCTTTTCCGCCAGTTTTAATGCCTCGCCCCATAGCCGTAGCCGTGGTTTGCCGAGC  >  NC_000913_3_pae_tpiA/2700452‑2700750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.