New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3921430	39 (1.160)	5 (0.160)	5/270	3.6	12.0%	coding (622/816 nt)	atpB	F0 sector of membrane‑bound ATP synthase, subunit a
	?	NC_000913_3_pae_tpiA	= 3921440	36 (1.120)					coding (612/816 nt)	atpB	F0 sector of membrane‑bound ATP synthase, subunit a
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTAGAACAGAATCA  >  NC_000913_3_pae_tpiA/3921291‑3921573                                                                                                                                                      |                                                                                                                                      aagGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACt                                                                                                                                       >  2:372009/1‑150 (MQ=255)         cAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGa                                                                                                                               <  2:342668/150‑1 (MQ=255)                     cAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCATCTCACCGGTATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTAc                                                                                                                   <  2:383636/150‑1 (MQ=255)                             ggAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCaa                                                                                                           <  1:51330/150‑1 (MQ=255)                             ggAAAATGGCCCACGGCACATTCAGGAACCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCTGGCTTACCCCTTCaa                                                                                                           >  2:584249/1‑150 (MQ=255)                                 aaTGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGAt                                                                                                       >  1:65842/1‑150 (MQ=255)                                  aTGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACt                                                                                                                                       >  1:156879/1‑117 (MQ=255)                                  aTGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACt                                                                                                                                       <  2:156879/117‑1 (MQ=255)                                     gCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAg                                                                                                   >  1:129049/1‑150 (MQ=255)                                      cccACGGCACATTCAGGATCCACTGTGATCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGt                                                                                                  <  1:273846/150‑1 (MQ=255)                                      cccACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATGAAGt                                                                                                  >  2:283789/1‑150 (MQ=255)                                      cccACGGCACATTCAGGACCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGt                                                                                                  <  1:449529/150‑1 (MQ=255)                                         aCGGCACATTCAGGATCCAGTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGa                                                                                               <  1:239677/150‑1 (MQ=255)                                                  tCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGa                                                                                      >  2:155276/1‑150 (MQ=255)                                                      gATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGc                                                                                  <  1:372009/150‑1 (MQ=255)                                                       aTCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAg                                                                                            <  2:569222/139‑1 (MQ=255)                                                       aTCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAg                                                                                            >  1:569222/1‑139 (MQ=255)                                                           aCTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGt                                                                             >  2:234562/1‑150 (MQ=255)                                                                   caccacGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAAc                                                                     >  2:558458/1‑150 (MQ=255)                                                                      cccGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGc                                                                  <  1:241403/148‑1 (MQ=255)                                                                           cAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAg                                                             <  2:65842/150‑1 (MQ=255)                                                                           cAACAGACCAGCAATCAGAATGAAAATCAGCTCACAGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGCACGCCCAGTGATTCAACGGCTGCAg                                                             >  1:122336/1‑150 (MQ=255)                                                                               aGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTAAAGGATTAAGTTGACCGGAACCAACGCCCAGTGATTGACCGGCTGcgcggtc                                                         >  2:248227/1‑144 (MQ=255)                                                                                 aCCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCaa                                                       >  1:431772/1‑150 (MQ=255)                                                                                   cAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTCACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAAct                                                     >  1:353048/1‑150 (MQ=255)                                                                                        aTCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGGGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGGCAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCCTCAACTGTTTc                                                >  2:350306/1‑150 (MQ=255)                                                                                         tCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCg                                               <  1:155276/150‑1 (MQ=255)                                                                                          cAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGt                                              <  1:284357/150‑1 (MQ=255)                                                                                                  aaaTCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAgccgc                                      <  2:431772/150‑1 (MQ=255)                                                                                                          tCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCt                              >  1:312313/1‑150 (MQ=255)                                                                                                           cACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGCACAGCAGGCTTACTCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCtt                             <  1:349954/150‑1 (MQ=255)                                                                                                              cGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCa                          >  1:351629/1‑150 (MQ=255)                                                                                                              cGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCa                          <  1:558458/150‑1 (MQ=255)                                                                                                                         ttACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTg                     >  2:70006/1‑144 (MQ=255)                                                                                                                         ttACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTg                     <  1:70006/144‑1 (MQ=255)                                                                                                                           aCCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTa             <  2:307344/150‑1 (MQ=255)                                                                                                                               aaCAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAAGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACCCCCAGTGATTGAACGGCTGCATCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTAGAAc         <  1:425824/150‑1 (MQ=255)                                                                                                                                  aGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTAGAACAGa      >  1:479961/1‑150 (MQ=255)                                                                                                                                      gCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTAGAACAGAATCa  >  2:32883/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                      AAGGCTTGCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCGAGTGAAACTGGTTTGGACAGCAGGCTTACCCCTTCAAGGATTAAGTTGACAGGAATGAACGCCCAGTGATTGAACGGCTGCAGCGTCAACTCTTTCGTGAAGCCGCCGATGCCTTTCATTTTGATGCTGTAGAACAGAATCA  >  NC_000913_3_pae_tpiA/3921291‑3921573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.