New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 253532	32 (0.950)	3 (0.120) +AAGGGACGAATATATTTGCCCATGTACCATTCCATT	3/210	3.7	12.0%	pseudogene (54/207 nt)	ykfJ	pseudogene
	?	NC_000913_3_pae_tpiA	596980 =	27 (0.800)					intergenic (+7/‑151)	cusC/cusF	copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTAAGTTATCTGGAAGTGCTGGATGCCGAGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTAACTCCAGGAG  >  NC_000913_3_pae_tpiA/596847‑597123                                                                                                                                      |                                                                                                                                                aGTAAGTTATCTGGAAGTGCTGGATGCCGAGCGTTCTTTATTTAACAACCGACAAGCTTGAATTGATCTTATTTATGCCCGTAAGGTTAACGAAGTTTCTTTGGATAGCGTACTTGTTGGCGGTTGACAGCAATATACTCGTAATATTTc                                                                                                                                 >  2:451660/1‑150 (MQ=255)        tATCTGGAAGTGCTGGATGCCGAGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGc                                                                                                                          <  2:295782/150‑1 (MQ=255)          tCTGGAAGTGCTGGATGCCGAGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGTCAGCAATATACTCGTCATACTTCAAGTTGCAt                                                                                                                        >  1:166741/1‑150 (MQ=255)                 gTGCTGGATGCCGAGCGTTCTTTATTTGCAAACCGACCAAGTTTAGTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGtgctgc                                                                                                                 >  1:500794/1‑150 (MQ=255)                    cTGGATGCCGAGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTAGTCATACTTCAAGTTGCATGTGctgcgtc                                                                                                              >  2:508491/1‑150 (MQ=255)                              aGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCt                                                                                                    >  1:265034/1‑150 (MQ=255)                                  ttCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCAcc                                                                                                >  1:384046/1‑150 (MQ=255)                                     tttATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCa                                                                                             >  1:571916/1‑150 (MQ=255)                                                 ccGACAAACTTTACTTGATCTGAATCAGGCCCGTCAGGTTAACGAAATTGCTTTGTAGACCGCACTTGGTGGCGGTTGACAGGAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCGGTCActtactta                                                                                 <  2:501016/150‑1 (MQ=37)                                                      aaaCTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTaa                                                                            <  2:384046/150‑1 (MQ=255)                                                       aaCTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAg                                                                           >  1:141044/1‑150 (MQ=255)                                                               ttGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTggg                                                                   >  1:204610/1‑150 (MQ=255)                                                                 gATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGa                                                                 >  1:107498/1‑150 (MQ=255)                                                                  aTCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGAt                                                                >  2:395259/1‑150 (MQ=255)                                                                               ccGTCAGGTTAACGAAATTTCTTTGTATACCGTACTTGGTGGCGGTTGACAGCAACATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTc                                                   <  2:448416/150‑1 (MQ=255)                                                                                       ttAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCt                                           >  2:78519/1‑150 (MQ=255)                                                                                          aCGTAATTTCTTCGGATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCa                                        >  2:86227/1‑150 (MQ=255)                                                                                            gAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAAc                                      <  1:25204/150‑1 (MQ=255)                                                                                              aaTTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTc                                    <  1:78519/150‑1 (MQ=255)                                                                                                         ataCCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTag                         >  2:484245/1‑150 (MQ=255)                                                                                                            ccGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGt                      <  1:508491/150‑1 (MQ=255)                                                                                                             cGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATGCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTa                     >  1:166547/1‑150 (MQ=255)                                                                                                                       ggCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTaa           <  2:204610/150‑1 (MQ=255)                                                                                                                           gTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTATAGTATGACTTTTAACTcc       >  1:1712/1‑150 (MQ=255)                                                                                                                            ttGACAGCAATATAGTCGGCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTAACTCCa      <  1:576806/150‑1 (MQ=255)                                                                                                                            ttGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTAACTCCa      <  1:484245/150‑1 (MQ=255)                                                                                                                                cAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTAACTCCAGgaa  >  1:499670/1‑149 (MQ=255)                                                                                                                                      |                                                                                                                                                AGTAAGTTATCTGGAAGTGCTGGATGCCGAGCGTTCTTTATTTGCAACCCGACAAACTTTACTTGATCTGAATTATGCCCGTCAGGTTAACGAAATTTCTTTGTATACCGCACTTGGTGGCGGTTGACAGCAATATACTCGTCATACTTCAAGTTGCATGTGCTGCGTCTGCGTTCGCTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGATTCACTCGCTTGTCGCCTTCCTGCAACTCGAATTATTTAGAGTATGACTTTTAACTCCAGGAG  >  NC_000913_3_pae_tpiA/596847‑597123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.