New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3986604 =	42 (1.160)	5 (0.150)	5/260	4.1	11.0%	noncoding (173/207 nt)	glmZ	sRNA antisense activator of glmS mRNA, Hfq‑dependent
	?	NC_000913_3_pae_tpiA	3986634 =	42 (1.260)					noncoding (203/207 nt)	glmZ	sRNA antisense activator of glmS mRNA, Hfq‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3986762‑3986604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcgttTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGCGCGTC  >  NC_000913_3_pae_tpiA/3986634‑3986778                                                                                                                                                                                                                                                                                                                  TGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACCGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAACAAACGCCGGCCCTTATTACGG                                                                                                                                                             >  2:154262/1‑149    ACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCCCTTATTACGGAGC                                                                                                                                                          >  1:611090/1‑149       AGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGGTAACGTTGCAGAATAACCCGTCACAGTAGTTCCTTCTCACCCAGCGCCACGAACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGG                                                                                                                                                       <  1:284156/149‑1        GCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGC                                                                                                                                                      <  1:533609/149‑1                                                                                                                                 AAACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTC                             >  1:483712/1‑149                                                                                                                                  AACGCCTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCC                            >  2:187945/1‑149                                                                                                                                       CTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGG                                                                                                          <  1:172934/66‑1                                                                                                                                       CTGCTCTTATTACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGG                                                                                                          >  2:172934/1‑66                                                                                                                                                 TACGGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTG             <  1:187945/149‑1                                                                                                                                                      AGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCTTCCGGGTGAGAAGGAA                                                                                               <  1:554252/62‑1                                                                                                                                                      AGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAA                                                                                               >  2:554252/1‑62                                                                                                                                                       GCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGC       <  1:264132/149‑1                                                                                                                                                       GCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCGGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGC       <  2:35800/149‑1                                                                                                                                                            CGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACGACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGATGCAGCTTCTTCCGCCTTGTGCAGTCTGTCCAGCGCGTC  <  2:153494/149‑1                                                                                                                                                                                                                                                                                                                  TGCACAAGCCGGAAGAAGCTGCAGCTATGCGTCGCGACGGTTTGATGTTAACGTTGCAGAATAACCCGCCACAGTAGTTCCTTCTCACCCGGAGGCAAGCACCTCCGGGGCCTTCCTGATACATAAAAAAACGCCTGCTCTTATTACGGAGCAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3986762‑3986604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcgttTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCAGTCTGTCCAGCGCGTC  >  NC_000913_3_pae_tpiA/3986634‑3986778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.