New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 773552	42 (1.160)	5 (0.140)	5/270	4.2	11.5%	coding (511/1140 nt)	cydB	cytochrome d terminal oxidase, subunit II
	?	NC_000913_3_pae_tpiA	= 773554	37 (1.070)					coding (513/1140 nt)	cydB	cytochrome d terminal oxidase, subunit II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTGTTTCGCACTGGCTGGC  >  NC_000913_3_pae_tpiA/773406‑773698                                                                                                                                                   |                                                                                                                                                   gCATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCctgctg                                                                                                                                                  >  2:122930/1‑149 (MQ=255) gCATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCctgctg                                                                                                                                                  >  2:22902/1‑149 (MQ=255)  cATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTgg                                                                                                                                                 >  1:517634/1‑149 (MQ=255)    tCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCa                                                                                                                                               >  1:61643/1‑149 (MQ=255)      ttCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTTCAGTTGCTTACCCCGTTCGGCCTGGTGGCAgc                                                                                                                                             >  2:348574/1‑148 (MQ=255)        cATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCCAGCAGGcc                                                                                                                                           <  1:120028/149‑2 (MQ=255)             gTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGAGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCgtggtg                                                                                                                                      >  1:421404/1‑149 (MQ=255)                    cGTTCCGCCGCTGGTAATTGGTGTCGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAg                                                                                                                               <  1:222475/149‑1 (MQ=255)                    cGTGCCGCCGCTGGTAATTTGTGTTGCGTTCAGTAACCTGTTGCAGGGCCTACCGTTCAACGTTGATGCATTTCTGCGGCTGTACTACACCGCTAACTTCTTGCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTAGTGAGCGTAg                                                                                                                               <  2:196504/149‑1 (MQ=255)                        ccgccgCTGGTAATTGGTGTAGCGTTCGGTAAAATGTAAAATTGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGgat                                                                                                                           >  1:313123/1‑149 (MQ=255)                        acgaagcTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGgat                                                                                                                           <  2:402099/144‑1 (MQ=255)                                        gtgtAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGgc                                                                                                           >  1:366564/1‑149 (MQ=255)                                        gtgtAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGgc                                                                                                           <  1:231948/149‑1 (MQ=255)                                             gccttCGGTAACCTTTTGTCGGGCGGCCCGTTCAACGGTGATGAATATCTGCGTCTGTACTCCATCGGTACATTCTTCCCGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAAc                                                                                                      <  2:122824/146‑1 (MQ=255)                                             gCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAAc                                                                                                      >  1:78957/1‑149 (MQ=255)                                                 tctgTAACCTGTTGCAGGGCGCACCGTTCAACTTTTATGTATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCTTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGCATGATCATTACTCAGGGCGCAACCTAt                                                                                                  <  1:73627/146‑1 (MQ=255)                                                 tCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTAt                                                                                                  <  1:404352/149‑1 (MQ=255)                                                  cGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATc                                                                                                 <  2:421404/149‑1 (MQ=255)                                                   ggTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCt                                                                                                <  2:313123/149‑1 (MQ=255)                                                      aaCCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCGTTACTCAGGGCGCAACCTATCTGCa                                                                                             >  1:302561/1‑149 (MQ=255)                                                       aCCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCaa                                                                                            >  1:79013/1‑149 (MQ=255)                                                          tGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATg                                                                                         >  1:266333/1‑149 (MQ=255)                                                          tGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATg                                                                                         >  1:73561/1‑149 (MQ=255)                                                                aGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTGTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATTCGTAcc                                                                                   >  2:165738/1‑149 (MQ=255)                                                                      tACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGc                                                                             <  1:595552/149‑1 (MQ=255)                                                                          gTTCGACGTTGATGAATATCTGCATCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCCGGCGTGGTTAGCGTACGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAAc                                                                         <  1:536581/149‑1 (MQ=255)                                                                          gTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGCGCGGAGGGATGATCATTACTCAGGGCGCCACCTATCTGCAAATGCGTACCATGGGCCAAc                                                                         >  1:126293/1‑149 (MQ=255)                                                                          gTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAAc                                                                         <  1:352079/149‑1 (MQ=255)                                                                               aCGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGCCGTGGTGAGCGTAGGGATGATCATTACTCCGGGCGCAACCTCTCTGCAAATGCGTACCGTGGGCGAACTGccc                                                                    >  2:179064/1‑147 (MQ=255)                                                                                     atgaATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTa                                                                                                                   <  2:63199/96‑1 (MQ=255)                                                                                     atgaATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTa                                                                                                                   >  1:63199/1‑96 (MQ=255)                                                                                                    tGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCt                                               >  2:31369/1‑149 (MQ=255)                                                                                                         tacACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAGCCTATCTGCAAATGCGTACCGTGGGCGACCTGCCCCTGCGTGCCCCGACAAGGGCTCAGGt                                          >  2:191629/1‑149 (MQ=255)                                                                                                                    cttcttCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCaaa                                                                                           >  1:624578/1‑89 (MQ=255)                                                                                                                    cttcttCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCaaa                                                                                           <  2:624578/89‑1 (MQ=255)                                                                                                                        ttcCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGac                           >  1:556621/1‑149 (MQ=255)                                                                                                                                 cTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTg                  >  1:617587/1‑149 (MQ=255)                                                                                                                                       ccGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTGTTTGGc            >  1:325135/1‑149 (MQ=255)                                                                                                                                           gcgcacggctaGCAGGCGTTGTGAGCATAGGGAGGATCTTTACTCTGGGTGCGACCTATCTGCACATGCGTACCGTGTGCCAAATGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGATCTGTTTCGCActg        <  2:589777/142‑1 (MQ=255)                                                                                                                                                ctgctgGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGc                                                                                        >  1:50407/1‑64 (MQ=255)                                                                                                                                                ctgctgGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGc                                                                                        <  2:50407/64‑1 (MQ=255)                                                                                                                                                ctgctgGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTGTTTCGCActggctgg   <  1:31369/149‑1 (MQ=255)                                                                                                                                                 tgctgGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTGTTTCGCACtggctggc  >  1:419578/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GCATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTAATTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCGTTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAACTTCTTCCAGTTGCTTAACCCGTTCGGCCTGCTGGCAGGCGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTATCTGCAAATGCGTACCGTGGGCGAACTGCACCTGCGTACCCGTGCAACGGCTCAGGTGGCTGCGCTGGTGACACTGGTCTGTTTCGCACTGGCTGGC  >  NC_000913_3_pae_tpiA/773406‑773698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.