| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1483726 = | 15 (0.380) | 11 (0.280) | 10/274 | NT | 42.5% | coding (666/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913_3_pae_tpiA | 2101750 = | NA (NA) | intergenic (‑6/+145) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
TGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGAAGTGCGCTATCGCCCGATTGTTGAAGAAGCCGATGACACCGAGC > NC_000913_3_pae_tpiA/1483578‑1483874 | taaaaactgggggtaacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 2:89164‑M1/1‑1 (MQ=255)taaaaactggggataaggccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 1:641293‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgtgtcagccgagaagaatttccccgcttattcgcaccttcc < 2:267032‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgggaanaatntccccgcttattcgcaccttcc < 1:579772‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 1:261338‑M1/149‑149 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 1:567501‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaaattccccccttattcgcaccctcc < 2:46598‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaattcccccgcttattggcaccgtcc < 1:460489‑M1/1‑1 (MQ=255)taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 1:73442‑M1/149‑149 (MQ=255) aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 2:473637‑M1/148‑149 (MQ=255) aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 1:393775‑M1/148‑149 (MQ=255) aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatttgcaccttcCCt < 2:476556‑M1/3‑1 (MQ=255) aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCt > 1:336891‑M1/147‑149 (MQ=255) aCCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGACCCGGCGTCCTGACCt > 1:277060/1‑149 (MQ=255) aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTaa > 1:554220‑M1/145‑149 (MQ=255) gACGGTATCCTGCTGGTGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAg < 2:226346‑M1/149‑2 (MQ=255) atcgcggaaaaggccgtacagggcggtgaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTaaa > 2:221410‑M1/144‑149 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctcaa < 1:529627‑M1/6‑4 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTaaa < 1:229702‑M1/6‑1 (MQ=255) tATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCa < 2:139345/149‑1 (MQ=255) gccTGCTGGAGGAGTTCCAGCAAGACCGGCTGCTGATGCAGTACGACACTATCATTATTGACGGCGCGCACGAACGCAGCCTTAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCAtt < 2:445634/148‑1 (MQ=255) agttccaGCAAGCCCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccc < 1:671565‑M1/146‑21 (MQ=255) gaTCCAGCAAGACCGCCTGCTGAGGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccct < 1:732‑M1/149‑22 (MQ=255) ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGAc > 2:286748‑M1/123‑149 (MQ=255) ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGAc > 1:683677‑M1/123‑149 (MQ=255) cAATACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGa > 1:649383/1‑149 (MQ=255) aaGACCGCCTGCTGATGCAGTACGACACTATAATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGACAGAACTGCTGCCGCGGAGTAAAGATATTACCACCATTAGCACTTCCGCGACTATCGAc > 1:650666/1‑149 (MQ=255) aGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGAGACTATCGAcc > 1:388665/1‑149 (MQ=255) ctgctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagctcatgtt > 2:616932‑M1/1‑112 (MQ=255) tgctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcatgttt < 1:368044‑M1/149‑39 (MQ=255) tgctgATGCAGTACGAAACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGGTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcacgttt < 2:557910‑M1/149‑39 (MQ=255) gctgATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg < 2:51009‑M1/149‑40 (MQ=255) ggctgattcaaagcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTc > 1:105207‑M1/102‑149 (MQ=255) aGTACCCCACTATCATTATTGCCGAAGCGCACGAACGCAGCCTGAACATCGGTTTTTTGCCCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCgcgc < 1:396993/149‑1 (MQ=255) tACGACACTATCATTATTGACGAAGAGCACGAACGCAGCCTGAATACCGATTTTTTGCTCGGCTATAAGAAAGAGTTGCTGCCGAGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgagatgagatcatgtttggcagctggag > 1:665472‑M1/1‑100 (MQ=255) tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaattactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACATCCACTACTAGCTACCCGGAACGCTTTTCGCGCCAc > 2:712088‑M1/95‑149 (MQ=255) aCGACATTAGTATTATTGACGAAGCGCACTAACTCAGTCTGAATATCGATTTCTTGCTCGGCTATTTGAAAGAGGTGCTGCCGCGGCCTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCAc < 2:234929/149‑1 (MQ=255) gACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGACACtt > 1:149238/1‑149 (MQ=255) gcagtgacgtgagaaaaaatcggcacaaacctgaagaaatgaaatgactgactcagccgagaagaatctccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGACTATCGATCCGGAACGCTTTTCGCGCCACTTtaa > 2:513546‑M1/90‑149 (MQ=255) attatcGACGAAGCGCACGAACGCAGCCTGAATATCGAGTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATgc < 1:315184/149‑1 (MQ=255) tattGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATgcgc < 1:162251/149‑1 (MQ=255) tGAGGAAGAGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGGGTCCCGACCCAAAAATCCGCAGCCCGTTGTTTGCTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAACGCGCCGa < 2:674087/149‑1 (MQ=255) gACGAAGCGCACGAACGCTGCCTGAATACCTCGTTTTTGCACGGCCCTTTGAAAGCGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCTACCCGGAACGCTTTTCGCGCCACTTTAATCATCCGCCGat > 2:157453/1‑149 (MQ=255) gACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat < 1:201999‑M1/149‑68 (MQ=255) aaatcggctcaaacatgaagaaatgacatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGattatt > 1:89031‑M1/74‑149 (MQ=255) gcgcACGAACGCAGCCTGAATATCGATTTTTTTCTCGTCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGAACTAAggaaggtgccaacgagtgcctgatatgagatcatgcttgtcatctggagccatagagcagggttcatcatgag > 2:680065‑M1/1‑76 (MQ=255) cgcACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGaa < 1:205091/149‑1 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCCCTTTACTAATGCGCCGATTATTGAAGtctc < 2:689433‑M1/84‑1 (MQ=255) tgtCGATTTGTTGCTTGCCTATTTGAAAGAGTTGCTGCCGGGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGGCCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATc < 2:379103/147‑1 (MQ=255) tatCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATc < 1:529927/149‑1 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttcCCTACAAATCATGATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGaa > 1:573518‑M1/44‑149 (MQ=255) cgagaagaatttccccgcttattcgcaccttcCCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGAAGTGCGCTATCg < 1:108349‑M1/117‑1 (MQ=255) agagTTGCTGCCGCGGCGTCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc > 1:711548‑M1/1‑29 (MQ=255) ttcgcaccttcCCTAAAAATCATTATAACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGACGTCTCCGGTCGGACCTATCCGGTGGAACTGCGCTGCCGCCCGATGGTTTAAGAagccag < 2:230578‑M1/138‑3 (MQ=255) ctagcatcttcCCTAAACATCATTATCACTTCCGCGACTATCGACCCGGAACGTTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGTGTGGGCTGGGTCGCCCGATTGTTGAAGAAGCCGa > 2:157042‑M1/12‑149 (MQ=255) tCCTGACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt > 1:716278‑M1/1‑11 (MQ=255) gACCTAACAATAATTACCTCTTCCGCGACTATCCACCCGGAACTCTTTTCGCTCCACTTTAATAATGCGCCGATTATTGAATTCTCCGGTCTGACCTATCCGGTGGAAGTCCGCTATCGCCCTATTTTTGAAGATGCCGATGCCACCGa < 2:562101/149‑1 (MQ=255) ccTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt < 2:84807‑M1/149‑145 (MQ=255) ccTAAggaaggtgcgaacaagtccctgatatgagaaaaggttggtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagacaagagattttcttgt > 1:728952‑M1/1‑5 (MQ=255) | TGACCGACGGTATCCTGCTGGCGGAGATCCAGCAAGACCGCCTGCTGATGCAGTACGACACTATCATTATTGACGAAGCGCACGAACGCAGCCTGAATATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGAAGTGCGCTATCGCCCGATTGTTGAAGAAGCCGATGACACCGAGC > NC_000913_3_pae_tpiA/1483578‑1483874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |