New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3186098 =	NA (NA)	3 (0.080)	3/272	NT	8.2%	intergenic (+8/‑89)	yqiG/insC1	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA
	?	NC_000913_3_pae_tpiA	= 3546580	34 (0.870)					coding (22/1317 nt)	gntT	gluconate transporter, high‑affinity GNT I system

GATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  NC_000913_3_pae_tpiA/3185950‑3186239                                                                                                                                                     |                                                                                                                                              gATTGCTTACGAGTAATCGCATTTGGCCGGGGTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATAATTATGGTTCATTCTCAGTTATAAg                                                                                                                                               >  1:698752/1‑149 (MQ=255)      cTTACGTGTCATCGCATTTGGCCGGGTGCACCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAACAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTgg                                                                                                                                          <  1:87367/149‑1 (MQ=255)           gAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGGTCAGATGTATGAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAACATTTATTGTTCATTATCCGTTATTAGACTGGccccc                                                                                                                                     >  1:18742/1‑149 (MQ=255)           gAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAAGATTTATTGTTCATTATCCGTTATTAGACTGGccccc                                                                                                                                     >  1:339062/1‑149 (MQ=255)            aGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGTTGTGTTTATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCt                                                                                                                                    <  1:167029/149‑1 (MQ=255)              tAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGa                                                                                                                                  >  1:317769/1‑149 (MQ=255)                    cATTTGGCCGGGTTCGCCCGGCAAAATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGTCCCCCTGAATCTcc                                                                                                                            <  2:269702/149‑1 (MQ=255)                          gCCGGGTTCGCCCGGCCACATCCTTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACaa                                                                                                                      <  1:660536/149‑1 (MQ=255)                           ccGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAAc                                                                                                                     >  2:461963/1‑149 (MQ=255)                           acGGGTTCGCCCTGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAAc                                                                                                                     <  1:645598/148‑1 (MQ=255)                                            catcatTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACACCCAATATCACTCAAATaa                                                                                                    >  1:366678/1‑149 (MQ=255)                                            catcatTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATaa                                                                                                    >  2:376548/1‑149 (MQ=255)                                                   aaCGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGGTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                                                                             >  2:553562/1‑149 (MQ=255)                                                      ggATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAACTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCAAGACAACAAATATCACTTAAATAAGTGATAGTCt                                                                                          >  2:523302/1‑149 (MQ=255)                                                         ttAATGATAAGTGGATCAGATGTATAAAAAATTAAGATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                       >  2:644571/1‑149 (MQ=255)                                                         ttAATGATAAGTGGATCAGATGTATAAAAAATCAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                       >  2:355781/1‑149 (MQ=255)                                                            aTGATAAGTGGATCAGTTGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                                                                    >  2:453337/1‑149 (MQ=255)                                                            aTGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGACTTGATTAAAAATGTTTATTGTACATTATCCGTTATTAGACTGCCTCCCTGAATCTCCAGACAACTAATATCACCTGCATAGGTGAGAGTCTTAATAc                                                                                    >  1:352221/1‑149 (MQ=255)                                                             tGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                                                                   >  1:366209/1‑149 (MQ=255)                                                              gATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                  >  1:586142/1‑149 (MQ=255)                                                                 aaGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtt                                                                               >  1:632562/1‑149 (MQ=255)                                                                     ggATCAGAGTTATAAAAAATTAAAATTAACCAAGATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTTTTAGACTGGCCCCCTTAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                           <  2:300918/149‑1 (MQ=25)                                                                      gATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCAGTAATGAGACTTGCCCCCTGAGTATCCAGACAACCAATATCAATTAAATAAGGTATAGTCTTAATACAAGtttttgg                                                                          >  2:537609/1‑147 (MQ=255)                                                                        ttaGATGAATAAAAAATTTAAATTAACCACAATAAGCGAATTGATTAAAAAGATTTATTGTTCATTATACGTTATTAGACTGGCCCCCTGAATCTCCAGTCAACCAATATTCCTTAAATAAGTGATAGTCTTAACACTAGTTTTTCGAc                                                                        <  2:356714/147‑1 (MQ=25)                                                                          aGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCCGCAGACAACCAATATCACTTCAATAAGTGATAGTATTAGTACTAGTTTTTAGAcaa                                                                      >  2:98086/1‑147 (MQ=37)                                                                            aTGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGCCTAGt                                                                    >  2:199866/1‑149 (MQ=255)                                                                               tataAAAAATTAAAATTAACCACAATAATCGAATTGATTAAAAATATTTATTGTTAATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt                                                                 <  2:579775/149‑1 (MQ=255)                                                                                ataAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt                                                                <  1:364085/149‑1 (MQ=255)                                                                                ataAAAAATTAAAAGTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTTATACTAGTTTTTAGTCTAGTCAtt                                                                <  2:636264/149‑1 (MQ=255)                                                                                 taAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                                                               <  2:627193/149‑1 (MQ=255)                                                                                   aaaaaTTAAAATTAACCACAATGAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga                                                             <  2:60516/149‑1 (MQ=255)                                                                                   aaaaaTTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga                                                             >  1:166326/1‑149 (MQ=255)                                                                                    aaaattaaaattAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTTAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                            <  2:722287/149‑1 (MQ=255)                                                                                       attaaaattaaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATATCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACCAGTCATTGTAAAAc                                                         >  2:475965/1‑149 (MQ=255)                                                                                          aaaattaaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAga                                                      <  2:723558/149‑1 (MQ=255)                                                                                           aaattaaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCCCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgct                                                     >  1:12166/1‑147 (MQ=255)                                                                                           aaattaaCCACAATAAGCAAATCGATTAAAAATAGTGATAGTTCATTATCCGTGAAGAAACTGGCCCCCTGAATCTCCAGATAAACCATATCACTTAGATAAGTGATAATCTTAATACTAATGGTTAAACTACACACTGGAGGActaaa                                                     >  2:213025/1‑145 (MQ=12)                                                                                               tatccACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                 <  1:170252/146‑1 (MQ=255)                                                                                               taaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                 <  1:734404/149‑1 (MQ=255)                                                                                               caaCCACAATAAGCGAATTTATTAAAAATCTTTATTGTTCATTACCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                 <  1:143270/148‑1 (MQ=255)                                                                                                   cacaATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCAGTTATTAGACTGACCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTATTAATACTAGTTTTTAGACTAATAATTGGAGAACAGAtgattaata                                             >  2:515827/1‑148 (MQ=18)                                                                                                           gCGAATTGATTAAAAATATTTATTGTTCATTATCGGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAgga                                     >  1:512306/1‑148 (MQ=255)                                                                                                           gCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAggg                                     >  2:435591/1‑149 (MQ=255)                                                                                                                ttGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGga                                <  2:317769/149‑1 (MQ=255)                                                                                                                   aTTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGaa                             <  1:536501/149‑1 (MQ=255)                                                                                                                     tAAAAATATTTATTTTGCATGATCCGTTATTAGACTGGGCCTCTGAATCTCCAGACCACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTGTTAGGGCCGGAGAAAc                           <  2:126533/149‑1 (MQ=14)                                                                                                                     tAAAAATATTTATTGTTCAGTATCCGTTATTAGATTGGCCCCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCAGGAGAAAc                           <  2:126802/149‑1 (MQ=255)                                                                                                                                  tGTTTATTATCCGTTTTTAGACTGGCTCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              <  1:70068/149‑1 (MQ=255)                                                                                                                                   gTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTATTAATAATAGTTTGTATGGTAGTCATTGGAGGACAGATGATTGATGTCTTAGGGCCGGAGAAAAGCAGCCGGCGTAcc             >  2:445759/1‑149 (MQ=14)                                                                                                                                    ttCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                 >  2:51248/1‑112 (MQ=255)                                                                                                                                    ttCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                 <  1:51248/112‑1 (MQ=255)                                                                                                                                       aTTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACcacac         >  1:212289/1‑149 (MQ=38)                                                                                                                                        ttATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATCCTAGTTTTTAGACTAGTCGTTGGAGACCAGATGCTTGATGTCTTAGGGCCGGAGAAACCAAGCCGTCGAACcacacc        >  1:651379/1‑148 (MQ=11)                                                                                                                                        ttATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACcacaca        <  2:248214/149‑1 (MQ=38)                                                                                                                                              gTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaaa  <  1:417288/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                              GATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  NC_000913_3_pae_tpiA/3185950‑3186239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.