New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2726057	50 (1.070)	6 (0.140)	6/260	5.0	11.5%	intergenic (‑311/+12)	kgtP/rrfG	alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon
	?	NC_000913_3_pae_tpiA	4040842 =	NA (NA)					intergenic (+206/+64)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913_3_pae_tpiA/2725910‑2726201                                                                                                                                                     |                                                                                                                                                 gTAAGGAGGACAGGTATGGAAGTGGGTAAGTTGGGGAAGCCGTATCCGTTGCTGCATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTc                                                                                                                                                 <  2:478121/149‑1 (MQ=255) ctAAGGAGGACACGTACGGAAGAGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTc                                                                                                                                                 <  1:31995/148‑1 (MQ=255)  tAAGGAGGACACCTAAGGAAGTCGCCAAGTTGGCGAAGCCGTATCCTTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCTGAC‑GGATGGCCttttt                                                                                                                                                <  1:263587/149‑3 (MQ=25)      gaggaCACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCCTCA‑GGATGGCCTTTCGCATa                                                                                                                                            >  2:797407/1‑149 (MQ=255)         gaCACGTATGGAAGTGGGCAAGTTGGGGAAGCCGGATTCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAAtt                                                                                                                                         <  2:425327/149‑1 (MQ=255)           cacGTATGGAAGTGGGCAAGTTGGGGGAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGC‑GAAAGGCCATCCTGAC‑GGATGGCCtttttgc                                                                                                                                              >  2:788447/1‑137 (MQ=37)           cacGTATGGAAGTGGGCAAGTTGGGGGAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGC‑GAAAGGCCATCC‑TGACGGATGGCCtttttgc                                                                                                                                              <  1:788447/141‑5 (MQ=37)                aTGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGcc                                                                                                                                  >  2:607175/1‑149 (MQ=255)                 tGGAGGTGGGGAAGTGGGGGAAGCCGGATCCGTTGCTGAATCTGGCATATGTTGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCt                                                                                                                                 <  2:396997/149‑1 (MQ=25)                   gAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTAGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGAAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTgg                                                                                                                               <  1:637277/149‑1 (MQ=255)                         ggCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGAt                                                                                                                                     <  2:538471/137‑1 (MQ=255)                         ggCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGAt                                                                                                                                     >  1:538471/1‑137 (MQ=255)                          gCAAGTTTGGGAAGCCGTATCAGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTcc                                                                                                                        <  2:705334/149‑1 (MQ=255)                          gCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGAGGGCCTTTCGCATAATTTGATGCCTGGCAGTTcc                                                                                                                        <  1:607175/149‑1 (MQ=255)                             aGTTGGGCAAGCCGGCTCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTGTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCTTAATCTGATGCCTGGCAGTTCCCTa                                                                                                                     <  2:7669/149‑1 (MQ=21)                                      aGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCAt                                                                                                            <  1:85432/149‑1 (MQ=255)                                       cccatctCCGTAGCAGAAACTGACATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAAGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATg                                                                                                           <  1:578520/143‑1 (MQ=21)                                        ccGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgg                                                                                                          >  2:418195/1‑149 (MQ=255)                                          gTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCACAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTCCTTTAGCATgggg                                                                                                        >  1:223393/1‑149 (MQ=255)                                              ccGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAc                                                                                                    <  1:131763/149‑1 (MQ=255)                                              ccGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAc                                                                                                    <  1:95826/149‑1 (MQ=255)                                                gTTGCTGAATCTGGCATATGTGGGAGTACAAGACGCGCAGCGTCGCATCAGGCAGTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAccc                                                                                                  <  1:302199/149‑1 (MQ=255)                                                  tGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCca                                                                                                <  1:134500/149‑1 (MQ=255)                                                         tCTGGCATATGTGGGACTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTACTCCCTGGCAGTCACGCAATCACCCATGGGGAAGCCCCCCACTAcc                                                                                         >  2:132389/1‑149 (MQ=18)                                                            ggCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTc                                                                                      >  2:749789/1‑149 (MQ=255)                                                              cATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCgg                                                                                    <  1:684415/149‑1 (MQ=255)                                                               atatGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgc                                                                                   <  1:640675/149‑1 (MQ=255)                                                                       gAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCCGTTCCCTACTCTCGCATGGGGAGACCCCACGCTTCCTTCGGCGCTACGGc                                                                           >  1:446899/1‑149 (MQ=255)                                                                       gAGTAGAAGACGCGCAGCGTCGCATCAGGCATGTTTTTCGGCGCCAATGAAAAAAAGCCATCCGTCA‑GGATGGCCGTTCGCATAATTTGCTGCCTGCCAGTTCCCCACTCTCGCATTGGTAGACCCCTCACTAACATCGACGCtcgagc                                                                           >  2:317285/1‑144 (MQ=18)                                                                             aaGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCa                                                                     >  1:660129/1‑149 (MQ=255)                                                                                tcgcgCAGCGGCGTGTCATGCATTTTTTTCTCCGCCAATGGAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAAGTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACtt                                                                  <  2:105872/148‑1 (MQ=21)                                                                                  gcgcAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCt                                                                <  1:418195/149‑1 (MQ=255)                                                                                            gCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCa                                                      >  1:246415/1‑149 (MQ=255)                                                                                             cATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTCACTTCTGAGTTCGGCAt                                                     >  1:170009/1‑149 (MQ=255)                                                                                              aTCAGGCCTTTTATTCTGCGTCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCTTATAATTTAGTGCCTTGCAGTTCCCTACTCTCCCATCGGGAGCCCCCACCCTACCATCTGCGCTACGGCGTTTCACTTCTGCGTTTGGCATg                                                    <  2:416402/149‑1 (MQ=18)                                                                                              aTCAGGCATTTTTTTCTGCGGCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATg                                                    <  1:132579/149‑1 (MQ=255)                                                                                              aTCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATg                                                    <  2:201708/149‑1 (MQ=255)                                                                                                      tttttttCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAgg                                            >  1:260097/1‑149 (MQ=255)                                                                                                        tttttCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          <  1:309093/149‑1 (MQ=255)                                                                                                        tttttCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          <  2:246415/149‑1 (MQ=255)                                                                                                                  ccAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcgc                                <  2:619463/149‑1 (MQ=255)                                                                                                                       gCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATAGGGTCAGGTGGGACCACCGCGCTAc                           >  2:430879/1‑149 (MQ=255)                                                                                                                             aGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCCCCGCGCTACGgccgc                     >  2:248797/1‑149 (MQ=255)                                                                                                                                gcATGCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAg                  <  1:626150/148‑1 (MQ=255)                                                                                                                                 cATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGCGTTCGGCATGGGGTAAGGTGGGACCACCGCGCTCCCGCCGCCCgg                 >  2:619941/1‑149 (MQ=17)                                                                                                                                 cATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          >  1:288143/1‑124 (MQ=255)                                                                                                                                 cATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          <  2:288143/124‑1 (MQ=255)                                                                                                                                  aTCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACgg                                                                            <  2:160725/89‑1 (MQ=255)                                                                                                                                  aTCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACgg                                                                            >  1:160725/1‑89 (MQ=255)                                                                                                                                  aTCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGCCCACCGCGCTACGGCCGCCAGGc                >  2:524304/1‑149 (MQ=255)                                                                                                                                            gATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAGGGCCGCCAGGCAAATTcgtt       >  1:612968/1‑146 (MQ=255)                                                                                                                                              gggCCTTTCGCATAATTTGCTGCCTGGGCGTTCCGTACTCTCGCATTGGGAGGCCCCACTCTACCATCGGCGCTACGGCGTTTCACTTCTGAGGTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGttt     <  2:462499/148‑1 (MQ=11)                                                                                                                                                 ccTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAt  >  1:384078/1‑149 (MQ=37)                                                                                                                                                     |                                                                                                                                                 GTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCA‑GGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913_3_pae_tpiA/2725910‑2726201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.