New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1115624 =	NA (NA)	4 (0.090)	4/260	6.0	NA	intergenic (‑134/+38)	mdtG/lpxL	putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
	?	NC_000913_3_pae_tpiA	1115655 =	NA (NA)					intergenic (‑165/+7)	mdtG/lpxL	putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
Rejected: Coverage evenness skew score above cutoff.

AGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGCATCATCCAGTGGC  >  NC_000913_3_pae_tpiA/1115513‑1115800                                                                                                                                                |                                                                                                                                                  aGGCGCGGTGAACATAAGAAGAAAAGATAAGCACGCTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCCGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt                                                                                                                                             >  2:649249/1‑149 (MQ=255)       ggTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATa                                                                                                                                       <  1:699815/149‑1 (MQ=255)        gTGAACATAAGAAGAACAGATACGCACACTAATTAGGCGACAG‑TGACCAGTTAAGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAg                                                                                                                                      <  1:393198/149‑1 (MQ=255)           aaCATAAGAAGAAAAGATAAGCACCCTAAGTATGCGCGCAAGTTAAAG‑GGGGCGTTATGCATAGAGGTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCAGCATGGGAGATTTAATAGCGt                                                                                                                                   <  2:785543/149‑1 (MQ=255)                  gaagaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGCAGCATCCTGCATGGGAGATTTAATAGCGTGAAGGaa                                                                                                                            <  2:665756/149‑1 (MQ=255)                   aagaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAAc                                                                                                                           >  1:341887/1‑149 (MQ=255)                    agaaAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg                                                                                                                          >  1:465669/1‑149 (MQ=255)                                     tAATTATGCGCCCGCCTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGAGTTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATAGGAGCTTTAATACCGTGAAGGATCGCGTTCCGGGCGTGgttt                                                                                                         >  2:98592/1‑149 (MQ=255)                                     tAATTATGCGCCCGCCTTCCAG‑GGGCCGCAATACAGAGCTCTTTTATCGCTAAATCAGGAGGAGTTGCCGTGGTAATGCCGCATGCCACTCTGCCACATCCGACATGAGAGCTTCAATAGCGTGAAGGAACACGTTCCGCGCgtgcgtt                                                                                                         >  2:97359/1‑145 (MQ=255)                                     tAATTATGCGCCCGATTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtttt                                                                                                         <  1:553639/149‑1 (MQ=255)                                          aTGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGc                                                                                                    >  1:668164/1‑149 (MQ=255)                                                ccGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGACCGCCTTCCGGGCGTGTTTTAAAGCGACGgt                                                                                              >  2:355108/1‑149 (MQ=255)                                                ccGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt                                                                                              <  2:341887/149‑1 (MQ=255)                                                  gACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAACCACCGgtgt                                                                                            >  2:565522/1‑149 (MQ=255)                                                    cTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGAc                                                                                                 <  1:205331/142‑1 (MQ=255)                                                    cTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGAc                                                                                                 >  2:205331/1‑142 (MQ=255)                                                     ttCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc                                                                                         >  1:124924/1‑149 (MQ=255)                                                        cAG‑GGGGCGGAATCCGGGGAGCTTTTAGCGCGAAAGCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac                                                                                      <  2:501766/149‑1 (MQ=255)                                                        cAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCAATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac                                                                                      <  2:567912/149‑1 (MQ=255)                                                                cgcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTGAAGGCGACGGTGTAACCACATATACt                                                                               >  1:95224/1‑149 (MQ=255)                                                                 gcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTg                                                                              <  1:88679/149‑1 (MQ=255)                                                                               ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGACTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATCCTGCTCTGCTGCcatca                                                                >  2:92322/1‑149 (MQ=255)                                                                               ttttATCGCTAAATCAGGGGGATTTGCTGGGTTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCcatca                                                                <  1:354919/149‑1 (MQ=255)                                                                                       cTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTGAAAGCGACGGTGTAACCACATTTACTGCTCTGCTGCCATCCTGATGCAt                                                        >  2:130117/1‑149 (MQ=255)                                                                                                    aTTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACtt                                           >  2:108528/1‑149 (MQ=255)                                                                                                     tttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACttt                                          <  1:355108/149‑1 (MQ=255)                                                                                                     tttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACttt                                          <  2:668164/149‑1 (MQ=255)                                                                                                         cTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTATAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTc                                      >  2:562753/1‑149 (MQ=255)                                                                                                              gTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGTTGCATTTTTCGACCACTTTGTTCATCCa                                 >  2:442425/1‑149 (MQ=255)                                                                                                               tAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCAc                                >  2:694630/1‑149 (MQ=255)                                                                                                                             aTTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTc                  >  2:720851/1‑149 (MQ=255)                                                                                                                                   aaGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCCTCCACGCGGCGGTAGTTTCGGcatc            >  1:331864/1‑149 (MQ=255)                                                                                                                                   aaGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGcatc            >  1:568031/1‑149 (MQ=255)                                                                                                                                    aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAGCGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGcatca           >  2:715826/1‑149 (MQ=255)                                                                                                                                    aGCAACCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGCCCACTTTGATCATCCACGCGGCGGTAGTTTCGGcatca           <  1:692676/149‑1 (MQ=255)                                                                                                                                          cGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGCATCATCCAGt     >  2:509964/1‑149 (MQ=255)                                                                                                                                             cATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGCATCATCCAGTGGc  <  2:567543/149‑1 (MQ=255)                                                                                                                                             aaTGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCTTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGCATCATCCAGTGGc  <  2:568853/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  AGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAG‑GGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATACTGCTCTGGTGCCATCATGATGCATTTTTCGACCACTTTGTTCATCCACGCGGCGGTAGTTTCGGCATCATCCAGTGGC  >  NC_000913_3_pae_tpiA/1115513‑1115800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.