New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4040816	NA (NA)	6 (0.140)	6/262	5.1	7.9%	intergenic (+180/+90)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913_3_pae_tpiA	= 4040840	75 (1.610)					intergenic (+204/+66)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGA  >  NC_000913_3_pae_tpiA/4040702‑4040982                                                                                                                                           |                                                                                                                                                cGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGACGCGCAGCTCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTgg                                                                                                                                       <  1:395459/149‑1 (MQ=11)        cTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTTCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaa                                                                                                                                >  1:772066/1‑149 (MQ=255)        cTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaa                                                                                                                                >  1:126205/1‑149 (MQ=39)        cTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCAGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaa                                                                                                                                >  1:537383/1‑149 (MQ=255)          gAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaa                                                                                                                              >  1:236772/1‑149 (MQ=40)             tAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaaaa                                                                                                                           <  1:544551/149‑1 (MQ=255)              aGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAAt                                                                                                                          <  2:82183/149‑1 (MQ=255)               ggACAAAGCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGACATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTACATTGGCGCAGAAAAAAATg                                                                                                                         <  2:332470/149‑1 (MQ=255)                gACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCCGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGc                                                                                                                        >  1:788808/1‑149 (MQ=255)                gACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGc                                                                                                                        >  1:716332/1‑149 (MQ=255)                 aCAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGcc                                                                                                                       <  1:448395/149‑1 (MQ=255)                      tCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATg                                                                                                                  >  1:752185/1‑149 (MQ=255)                                  ggATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCGGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAGCCTGACGGATGGCGTTTTTGCATTCGCGTAGAAAAAAATGCCGGATGCGACGCTG‑gcgc                                                                                                     <  1:486495/149‑1 (MQ=17)                                    aTTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGt                                                                                                   >  1:211451/1‑149 (MQ=255)                                     tttGAAGGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGAGAAAAAAAAAATGCCGGATGCGACGCTG‑GCGCGTc                                                                                                  <  2:467008/149‑1 (MQ=255)                                     tttGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTc                                                                                                  <  1:219036/149‑1 (MQ=255)                                        gAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTa                                                                                               <  2:716332/149‑1 (MQ=255)                                           cGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAAGGCCGGATGCGACGCTG‑GCGCGTCTTATcc                                                                                            >  1:560919/1‑149 (MQ=255)                                              tGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGc                                                                                         <  2:752185/149‑1 (MQ=255)                                                   aGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTAct                                                                                    >  2:612699/1‑149 (MQ=255)                                                        cggtctggAGGCTGGCGGGCACGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGc                                                                               <  1:129127/143‑1 (MQ=255)                                                           cccGTAGGTTGGCGGGCAGGACCCCCGTCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTa                                                                            <  1:139722/149‑1 (MQ=255)                                                            ccGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTCCTCTTGCTTAt                                                                           >  2:119580/1‑149 (MQ=255)                                                            ccGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCAAGGGATCAAATTAAGCAGAAAGGCTTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTAt                                                                           >  1:117847/1‑149 (MQ=25)                                                             cGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATc                                                                          >  2:303554/1‑149 (MQ=255)                                                             cGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATc                                                                          <  2:65329/149‑1 (MQ=255)                                                               gcggggggggggCAGGACGCCCGCCATAAACTGCTAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGGATTGGCGCAGAAAAAAATGCGGGATGCGACGCTT‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCg                                                                        <  2:402678/147‑1 (MQ=25)                                                                  ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTc                                                                     <  2:287688/149‑1 (MQ=255)                                                                  ggTGGCGGGAAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGGATGGCCTTTTTGCACTGGCGCAGAAAAAAATGCCGGAGGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTc                                                                     <  1:32812/149‑1 (MQ=255)                                                                        gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCttt                                                               >  2:223769/1‑149 (MQ=255)                                                                          gccggACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGGCATCCTGACGGATGGCCTTGTTGCATTGGCGGAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTg                                                             <  2:341855/146‑1 (MQ=255)                                                                            aGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCa                                                           >  1:448564/1‑149 (MQ=255)                                                                             ggACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAt                                                          <  1:612699/149‑1 (MQ=255)                                                                              ggcgcccgccATCAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtc                                                         <  1:591608/147‑1 (MQ=255)                                                                              gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtc                                                         <  2:222969/149‑1 (MQ=255)                                                                                  cccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccact                                                     <  2:236772/149‑1 (MQ=255)                                                                                   ccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactc                                                    >  1:746949/1‑149 (MQ=255)                                                                                    cgccATAAACTGCCAGGCATCAAATTAAGCAGAAGCCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTAGCTTATCCGTTCTGCTTTTGCAtccactct                                                   >  2:398702/1‑148 (MQ=255)                                                                                       cATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                                >  2:172389/1‑149 (MQ=255)                                                                                        aTAAACTGCAATGCATCAAATTAAGCAGAAGGCCATCCTCACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGCCGCCGAAAACGT‑TTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacca                                               <  1:160216/149‑1 (MQ=21)                                                                                          aaaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCTGCCTACTCTTGCTTATCCTTTCTGCTTTTGCATCCCCTCCACccca                                             >  2:521262/1‑149 (MQ=255)                                                                                          aaaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCCTCCACTCCACcaca                                             >  1:790035/1‑149 (MQ=255)                                                                                            aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTTCTTTTGTTTAGAAAAAAATTCCGGATGCGACGCTG‑GCCCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTCGCATCCACTCCACCGCaaa                                           >  2:167835/1‑149 (MQ=25)                                                                                              tGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAACAt                                         >  1:778724/1‑149 (MQ=255)                                                                                              tGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAAt                                         >  1:576606/1‑149 (MQ=255)                                                                                                 cAGGCAGCAAATGAAGCAGAACGCCATCCTGACGGATGGCCTTTGTGCATTGGTGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcag                                      <  1:351688/149‑1 (MQ=37)                                                                                                   ggCATCAAATTAAGCAGAAGCCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcc                                    >  2:707432/1‑149 (MQ=255)                                                                                                    gCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcca                                   <  2:603007/149‑1 (MQ=255)                                                                                                      aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACCAAATcagccagc                                 >  2:635115/1‑149 (MQ=255)                                                                                                      aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagccagc                                 >  2:635139/1‑149 (MQ=255)                                                                                                      aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagccagc                                 >  2:303802/1‑149 (MQ=255)                                                                                                       tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATca                                       >  2:564850/1‑142 (MQ=255)                                                                                                       tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATca                                       <  1:564850/142‑1 (MQ=255)                                                                                                       tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCagccagcc                                >  2:99387/1‑149 (MQ=255)                                                                                                         aaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGcccc                              <  1:93336/149‑1 (MQ=255)                                                                                                          aaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTTGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                              <  1:326635/116‑1 (MQ=255)                                                                                                          aaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                              >  2:326635/1‑116 (MQ=255)                                                                                                                  aaacggCCATCCTGCCGGATGCCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatca                     <  1:82373/145‑1 (MQ=255)                                                                                                                  aaaaGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatca                     <  1:437466/147‑1 (MQ=255)                                                                                                                  aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACCAAATCAGCCAGCCCCTCCAcatca                     >  1:115860/1‑149 (MQ=255)                                                                                                                   gAAGGCCATCCTGACGGATGGCCTTTTTTCATTTTCGCAGAAAAAAAAACCGCACGCGACGCAC‑GCCCCCCTTATCCAGCCTACTCTTTCTTATCCGCTCCGCTTTTGCATCCACTCCACCACAAAATCAGCCACCCCCTCAAcatcac                    >  2:483538/1‑148 (MQ=25)                                                                                                                      ggCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTAt                                                                                              <  2:223020/72‑1 (MQ=255)                                                                                                                      ggCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTAt                                                                                              >  1:223020/1‑72 (MQ=255)                                                                                                                       gCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAat                >  1:259860/1‑149 (MQ=255)                                                                                                                        ccATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAata               <  1:582353/149‑1 (MQ=255)                                                                                                                         cATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGAATGCGCCGGTG‑GCGCGTCTTATCCAGACTACTCTTGCTTATCCGTTCTGCCTGTGCATCCACTCAACCACACAAGCAGCCAGCCCCTCAACACCCTTAatat              >  2:803427/1‑149 (MQ=25)                                                                                                                          aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATc             <  2:126205/149‑1 (MQ=255)                                                                                                                            ccTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCa           <  1:413157/149‑1 (MQ=255)                                                                                                                            ccTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCa           <  1:99387/149‑1 (MQ=255)                                                                                                                            ccTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCa           <  1:44174/149‑1 (MQ=255)                                                                                                                              tGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGc                                                                               >  1:321013/1‑79 (MQ=255)                                                                                                                              tGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGc                                                                               <  2:321013/79‑1 (MQ=255)                                                                                                                                aCGGATCGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACCCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTaa       <  1:22471/149‑1 (MQ=255)                                                                                                                                    aTGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCg   >  1:228292/1‑149 (MQ=255)                                                                                                                                     tGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGa  <  1:223769/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                CGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTG‑GCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGA  >  NC_000913_3_pae_tpiA/4040702‑4040982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.