| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1755758 | 1 (0.030) | 29 (0.740) | 19/280 | 1.3 | 96.7% | coding (61/1413 nt) | pykF | pyruvate kinase I |
| ? | NC_000913_3_pae_tpiA | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
CACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGG > NC_000913_3_pae_tpiA/1755610‑1755903 | gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:435746‑M1/146‑149 (MQ=255)cacTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAg > 1:312724/1‑149 (MQ=255) acaagaaaatctcttttttaggcgtacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGc < 2:154573‑M1/5‑1 (MQ=255) acaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGc < 1:527369‑M1/5‑1 (MQ=255) agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTaa < 2:52173‑M1/8‑1 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTaaa < 1:597890‑M1/9‑1 (MQ=255) gTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGCCTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATAGAAGggaaggt > 1:10587‑M1/1‑142 (MQ=255) tACCGGATTCGCCTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcga < 1:637178‑M1/149‑12 (MQ=255) gtggtcggatggcgcttcctgctgaattcactgtcggcgaaggtaaggtgatgactcctgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaaggattagtattcagcttccTTAGCTAAAATGCTGGACGCTg > 1:168625‑M1/128‑149 (MQ=255) ctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTg > 1:523788‑M1/128‑149 (MQ=255) tggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTgg < 2:219176‑M1/23‑1 (MQ=255) tCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCTTCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcgg < 1:199087‑M1/149‑20 (MQ=255) ggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:111651‑M1/126‑129 (MQ=255) ggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 2:111651‑M1/4‑1 (MQ=255) tttCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaa > 2:459170‑M1/1‑126 (MQ=255) tttCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaa > 1:222815‑M1/1‑126 (MQ=255) tttCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGAACGTCATGAAAAAGCCCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggacggtgcgaataagcggggca > 1:657251‑M1/1‑126 (MQ=255) cAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttc > 1:540878‑M1/1‑119 (MQ=255) gtactgctgaagtcactgtcggcgaaggtaagttgatgactcatgatgaactctgttctatggctccagatgactaacatgatctcatctcagggactttttcgcaccttccTTAGTTAAAATGCTGGACGCTGGCATGAACGTTATGc > 2:510624‑M1/113‑149 (MQ=255) tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCt < 2:594181‑M1/41‑1 (MQ=255) tgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccgtgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGaa > 1:545037‑M1/106‑149 (MQ=255) tttCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc > 2:605827‑M1/1‑99 (MQ=255) tttCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc > 1:565755‑M1/1‑99 (MQ=255) gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCAt > 1:154573‑M1/96‑149 (MQ=255) tcCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 1:534613‑M1/149‑55 (MQ=255) cATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt < 1:459170‑M1/149‑58 (MQ=255) attggaggactgatgatgacccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAg > 2:495504‑M1/83‑149 (MQ=255) ttgatgtctcatgatggacgctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGaa > 2:229024‑M1/81‑149 (MQ=255) cAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 1:568021‑M1/149‑67 (MQ=255) tgactcatgatgaatgctgttgtatggttccagatgacaaacatgatcgcatatcagggatttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACg > 2:139696‑M1/77‑149 (MQ=255) gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACgg < 2:14109‑M1/74‑1 (MQ=255) actGCCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc < 2:312724‑M1/149‑83 (MQ=255) tCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 1:343040‑M1/1‑63 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTgcgc > 2:222405‑M1/54‑149 (MQ=255) gACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcttgtttgtgccgattttttcttccgtgaatgccttgac > 1:179725‑M1/1‑53 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGtgat > 2:597890‑M1/46‑149 (MQ=255) gttgtcaccagCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt < 2:676998‑M1/144‑107 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAAc < 1:509421‑M1/113‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTCAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAAc > 2:484936‑M1/37‑149 (MQ=255) aCCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgcatcagcctatttagacc > 2:93390‑M1/1‑37 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGt > 1:219176‑M1/33‑149 (MQ=255) cGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtca < 1:121078‑M1/73‑47 (MQ=255) cGAAAACCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 2:121078‑M1/1‑27 (MQ=255) aaaaCCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcca < 2:540878‑M1/149‑125 (MQ=255) aaaaCCGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 1:296656‑M1/97‑73 (MQ=255) gggacttgttcgcaccttccTTAGCTAAAATTCTGGACGCTGGCATGAACGTTATGc > 2:152637‑M1/21‑57 (MQ=255) gggacttgttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGc < 1:152637‑M1/37‑1 (MQ=255) cGAATCTGAAGAGATGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaa > 1:496221‑M1/1‑20 (MQ=255) acctgAAGAGATGTTAGggaaggcgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttcgaccgtttcttcgccatttaaggc < 2:378534‑M1/147‑133 (MQ=255) ttcgcaccttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCt > 1:594181‑M1/13‑149 (MQ=255) tGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAACACCGCCGCTCTCCTGCTTg > 1:99181/1‑149 (MQ=255) accttccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATa < 2:545498‑M1/142‑1 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaa < 1:618847‑M1/135‑130 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaa > 2:618847‑M1/1‑6 (MQ=255) ccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCaaa > 1:14109‑M1/3‑149 (MQ=255) ccTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCaaa > 1:545498‑M1/3‑149 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcacgtaaatgccttgaatcagcctatttaaaccgtttcttcgccatttaaggcattatccccagt > 1:4468‑M1/1‑5 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactaagtcatttcatttcttcatgtttgagccgaatttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagt < 2:528689‑M1/149‑145 (MQ=255) cTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGaa < 1:217563‑M1/69‑1 (MQ=255) cTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGaa > 2:217563‑M1/2‑70 (MQ=255) ataggggaaggtgcgaataagcggggaaatttttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagt < 2:105842‑M1/145‑145 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtt > 2:568945‑M1/1‑4 (MQ=255) | CACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGAAGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATACCAAAGG > NC_000913_3_pae_tpiA/1755610‑1755903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |