New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2662541	NA (NA)	4 (0.110)	4/266	4.7	NA	noncoding (233/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_pae_tpiA	= 2662574	NA (NA)					noncoding (266/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAG  >  NC_000913_3_pae_tpiA/2662393‑2662681                                                                                                                                                     |                                                                                                                                             aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg                                                                                                                                              <  1:32957/149‑1 (MQ=255)         tgggAGGCGGCGTGAACGCCTTTTCCGACCGACGTTTCTGGTGACTGTAGGCCTTATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGGCGCTGGTACGCTTTATCCGACCTACGGTTCTGTTCACTGTCGGCCTGATa                                                                                                                                      >  2:444848/3‑149 (MQ=14)                      gaatcccTTATCCGACCGACGGTTCTGTTCACTGTAGCCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTAcgc                                                                                                                         <  1:646752/144‑1 (MQ=255)                            cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATCACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAAGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCGGATAAGACGCATTACGCGTCGCa                                                                                                                   >  1:60923/1‑149 (MQ=255)                                gccGACCTACGGTTCTGTCCACTGTAGGCGTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTCCGAGTCGCATCAg                                                                                                               <  2:534896/148‑1 (MQ=255)                                   gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGTCGCGGCGGGAACCCCTTTTCTGCCCTACGATTCTGTCCAGTGTCGGCCTGATAAGATGCATTACGCGTCCCTTCAGGcc                                                                                                            >  2:413950/1‑148 (MQ=11)                                        aCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc                                                                                                       >  1:472828/1‑149 (MQ=34)                                               tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGAc                                                                                                                                  <  2:38698/115‑1 (MQ=32)                                                gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                                                               <  2:687281/149‑1 (MQ=35)                                                gTTCACTGTAGGCCTGATAACACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACGGTAGGCCTCATAAGACCCATTACACGTCCCATCATGCCACGCCTGttgctc                                                                                               >  2:222732/1‑145 (MQ=11)                                                 gtCACTGTAGGCCTGAGAAGACGCATTACGCGGTGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                                                              <  2:184078/148‑1 (MQ=255)                                                      tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                                                         >  2:442941/1‑149 (MQ=38)                                                      tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt                                                                                         >  2:42838/1‑149 (MQ=38)                                                          ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa                                                                                     <  1:42838/149‑1 (MQ=255)                                                           gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAGTTCTGTTCACTGTAGGCCGGATAAGACGCATTACGCGTCGCATCAGGCAGCGGCTGTTATTAGGGCTTGGTAc                                                                                    >  1:190245/1‑149 (MQ=11)                                                           gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAAGCCCTCGCTGGCGTAGGGTTCTGTTCACTGTAGGCCTGATAAGAGGCATTACGCGTGGCTTGGGGCAACGGCTGTTGTTCTGCGTTGTTaa                                                                                    >  1:164816/1‑148 (MQ=11)                                                           gCCTGATAAGAAGCATTACGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                                                                    <  2:514364/149‑1 (MQ=255)                                                            ccTGATAAGACGCATTACGCGTGGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                                                                   <  1:187175/149‑1 (MQ=255)                                                                aTAAGACGCATTACGCGTCGCGTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa                                                                               <  2:693494/149‑1 (MQ=255)                                                                     aCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCCACGGCTGTTCTTCGGCCTTGTGTCCTTTATTctg                                                                          >  2:633154/1‑149 (MQ=255)                                                                     aCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTttg                                                                          >  2:696149/1‑149 (MQ=255)                                                                        cATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgccg                                                                       <  2:473401/149‑3 (MQ=255)                                                                          ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGTCTTCTCCGGGCTACGATTGTGTTCAGTGTAGGCTTGATAAGGCGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                                                                     <  1:445412/149‑1 (MQ=17)                                                                            aCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa                                                                   >  1:397333/1‑149 (MQ=255)                                                                                  cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                             <  2:86569/149‑1 (MQ=255)                                                                                    cATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                                                           >  2:186163/1‑149 (MQ=255)                                                                                    cATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                                                           <  1:442941/149‑1 (MQ=255)                                                                                        aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCCCCATACAAGCCAGa                                                       >  2:163850/1‑149 (MQ=255)                                                                                            aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                                                           >  1:538813/1‑141 (MQ=255)                                                                                            aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGc                                                           <  2:538813/141‑1 (MQ=255)                                                                                             agggtcgTCGTAGGCGGCGTGAACGCCTTATCCGACCGACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATccc                                                  <  2:543177/143‑1 (MQ=21)                                                                                              cggcggTCGCATGCGGCGTGAACTCCTTACCCGACCTACGGTTCAGCGCCAGCTAGGCCTGATAAGACTCATTACGCGTCGCATCAGGCAACGTCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCcg                                                 <  1:444848/149‑1 (MQ=21)                                                                                                 atttCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCCGGTCACTGTTTGCCTGTTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCgcgc                                              >  1:141153/4‑149 (MQ=21)                                                                                                          gcggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCACTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTc                                     <  1:674063/149‑1 (MQ=255)                                                                                                            ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa                                   >  2:358745/1‑149 (MQ=255)                                                                                                                  aaCGCCTTATCCGACCTACGGTTGTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                             <  1:386534/149‑1 (MQ=255)                                                                                                                  aaCGCCTTACCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTg                             <  2:543460/149‑1 (MQ=255)                                                                                                                    cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGc                           >  1:521337/1‑149 (MQ=255)                                                                                                                     gCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGAATTTCAACTCCTGGCt                          >  2:676671/1‑149 (MQ=255)                                                                                                                         tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTcc                      <  1:186163/149‑1 (MQ=255)                                                                                                                             cGACCTACGGTTCTGTTCATTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgc                  <  2:99116/149‑1 (MQ=255)                                                                                                                                          tagtCACTGTAGGCTTGATAAGCCGCATTACGCGGCGCATCAGGTAACGGTTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCCCAATACAAGCCAGAATCCCGCGCATGATATTCAACTTCTGGCTTTCCGTGCGCGCACGGGTaaa     <  2:4766/146‑1 (MQ=255)                                                                                                                                           gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAAc    >  2:382037/1‑149 (MQ=255)                                                                                                                                             tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCACGATATTCAACTCCTGCCTTTCCGGGCGCGCACGGGAAAACAg  >  2:122901/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             AACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAG  >  NC_000913_3_pae_tpiA/2662393‑2662681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.