New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3638470	73 (1.320)	4 (0.080)	4/264	7.1	5.3%	coding (829/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
	?	NC_000913_3_pae_tpiA	= 3638477	76 (1.470)					coding (836/1500 nt)	pitA	phosphate transporter, low‑affinity; tellurite importer
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3638317‑3638470 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgagcagcGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGA  <  NC_000913_3_pae_tpiA/3638477‑3638331                                                                                                                                                                                                                                                                                                               GGCGCGAACGATGGTCAGAAAGGCATTTGTCTCGGTATGTTTGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGA                                                                                                                                                          <  1:371823/149‑1  gtgccAACGATGGCCAGACAGGCATTGGTCTGGTTATGTTGGTATTTCTTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATTAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAG                                                                                                                                                         <  1:347231/144‑1  GCGGGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATGGGCGTCGCGCCAGCAGGCTTCGTGGTAAACCTAAAGGTCACTGGCTACGAAATCACCCGTCCCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAG                                                                                                                                                         <  1:187275/149‑1    GCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGATACGACATCATCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCA                                                                                                                                                       <  2:901840/149‑1    GCGAACGATGGTCAGAAAGGCATTGGTCGGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCGCCGCACCCGGCCGTACCCGTGCTGCCATCAACAAAGTCGAGGCTTACTGTGAGCA                                                                                                                                                       >  1:473614/1‑149                   AAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCGCAGGATGCTGCT                                                                                                                                        >  1:949496/1‑149                                      TGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTT                                                                                                                     <  2:949496/149‑1                                                 ATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATG                                                                                                              <  1:22555/145‑1                                                 ATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATG                                                                                                              >  2:22555/1‑145                                                                                                                                                gttaGAGCAGAGCAGGATGCTGCTCAAAGTAAGCGTCGACGTTGTGGATGGCAGGACGGGTACGGGTGTTGTCGTAGCCAGGGGCATTCATGTTCACCACGAAGCCGGCTCGCGCGACGCCAATCAATACCAACATAACCAGACCAATG           <  2:864842/145‑1                                                                                                                                                 TTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATGAATACACACAGGACCAAACCAATGC          >  2:605300/1‑149                                                                                                                                                         GCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGA  >  1:954805/1‑149                                                                                                                                                                                                                                                                                                               GGCGCGAACGATGGTCAGAAAGGCATTGGTCTGGTTATGTTGGTATTGATTGGCGTCGCGCCAGCAGGCTTCGTGGTGAACATGAATGCCACTGGCTACGAAATCACCCGTACCCGTGATGCCATCAACAACGTCGAAGCTTACTTTGAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3638317‑3638470 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgagcagcGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGA  <  NC_000913_3_pae_tpiA/3638477‑3638331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.