| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2888334 = | NA (NA) | 4 (0.080) | 4/270 | 7.2 | NA | noncoding (1/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2888367 = | NA (NA) | noncoding (34/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTTTTCCAGTTCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGTTCATCAAGCGACG > NC_000913_3_pae_tpiA/2888222‑2888514 | gTTTTTCCAGTTCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGGTGCGACGCTGGCGCGTTCTTGTCAGGCGTag > 1:223190/1‑148 (MQ=255) ttttCCAGTTCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACaa < 1:201012/149‑1 (MQ=255) ttttCCAGTTCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACaa < 2:130708/149‑1 (MQ=255) ttCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc > 1:516457/1‑149 (MQ=255) ttCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATc < 1:211226/149‑1 (MQ=255) ggccagTATGCGATCCACCTTCGGCAGTTCGTTCAGGGCTTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGGCTACAAGACCGGGCTGATGTTTAATCCCACAAATc < 2:542840/148‑1 (MQ=255) cagAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcg > 1:895951/1‑149 (MQ=255) agAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACTCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgc < 1:650064/149‑1 (MQ=255) tGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCATCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCACACAAATCACGCGCCg > 1:375764/1‑149 (MQ=255) gATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGAt < 1:72290/149‑1 (MQ=255) cTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCAc > 1:880708/1‑149 (MQ=255) ttCGGCAGTTCGTTCATGTCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTCAAAGCCCTGTGTTAAGTTCTATCCCTCAAATCACGCGCCGGATCGAGCAcc > 2:454507/1‑149 (MQ=255) gCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGACTTGCCTGATTCGACGCTGACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGGGCACCGGGc > 2:692212/1‑149 (MQ=255) cAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCg > 2:606877/1‑149 (MQ=255) ttcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGCCTGATGGTTAATCCCCCAAATCACGCGCCGGATCGAGCACCTGGCGCat > 2:35570/1‑149 (MQ=255) gttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTGACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACGAATCACGCGCCGGATCGAGCACCGGGCGAatgct > 1:935815/1‑147 (MQ=255) cAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGACTGATTcc > 1:75111/1‑149 (MQ=255) ttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCcgcacgca < 1:683179/149‑1 (MQ=255) aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGACTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCcgcac > 1:44839/1‑142 (MQ=255) aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGACTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCcgcac < 2:44839/142‑1 (MQ=255) tccaGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACATGACCGGCCTGATGGTTAGTCCCACGAAGCACGCGCCGGATCGGGCACCGGGCAAATGATTACCGCCGGAACCGTa > 2:406073/4‑149 (MQ=255) tCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTa > 1:657398/1‑149 (MQ=255) tttGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATCAGCACACGCACCGTAAAGTc > 2:893515/1‑149 (MQ=255) tttGGACATAGATTCCTCACTGTTTGCCCTTGCTGATGCGACGCTCACGCGTTCTTATCATGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCCCCGGGCGAATGATGCCCGCACGCACCGTAAAGTc < 2:310023/149‑1 (MQ=255) aCATAGAGTCCGCACTGTTGGGCTTGCCTGATGAGGAGCGCGCGCGTTCTGATCAGACCTACAAGACCGAGCTGATGGTTCATCCCACAAATCACCCGCCGCATCGAGCACCGGCCGAATGATGCCCGCACGCACCCTAAAGTCGcaca > 2:920849/1‑146 (MQ=255) cATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTACAGTCGCGGaa > 2:888121/1‑149 (MQ=255) aGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCACGCCTACAAGACCGGGCTCATGGTTAATCCCACAAATCACGCGCCGGATCGCGCACCCGGCGAATGATGCCCCCCCGCACCGTAAAGTCGCCGAAGcc > 1:628701/1‑149 (MQ=255) ccttgcctGAGGCGACGCTCAGGCGGTCTTATCAGGCCTACGAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCGGCTTCGCGct < 2:390995/149‑1 (MQ=255) cttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCtttattgac < 2:531999/149‑8 (MQ=255) ttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGctct < 1:217385/149‑1 (MQ=255) ttgcctGAGGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGctct < 2:614265/149‑1 (MQ=255) ctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAACGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCg > 1:283325/1‑149 (MQ=255) ctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATAATTAATCCCCCAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCCCCCGCTTCGCGCTCCTTcc > 2:656603/1‑148 (MQ=255) tggtGCGACGCTCACGTGTGCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGc < 2:419514/146‑1 (MQ=255) gATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGcc > 2:833877/1‑149 (MQ=255) gCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCCCTTTCGCCCAg > 1:807212/1‑149 (MQ=255) gTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGtt > 1:789962/1‑149 (MQ=255) gTTCTGATCGGGTTTACAAGATCGGGTTGATGGTTATGCCCACATATCACGCGCCTCATCAAGCACCTTGCGAATGATGTCCGCACGCATCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGtt < 2:403206/149‑1 (MQ=255) ttCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCCCCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTTGCCCAGCGCCCTATCAGTtc < 2:176009/149‑1 (MQ=255) ttCTTATCAGGCCTACAAGACCGGGCTGATGGCTAATCCCACAAATCACGCGCCGCATCGAGCACCGGGCGAATGAGGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGtac > 2:215714/1‑147 (MQ=255) ttATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCGGtcactc > 1:958185/1‑144 (MQ=255) tATCAGGCCTACAAGACCGGGCGGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGTtcatca < 2:535159/149‑1 (MQ=255) ataaGGCCTACAAGACCGGGCTGCTGGTTCATCCCGCAAATCCCGCGCCGGATCGAGACCCGGGCGACTGATGCCCGCAAGCCCAGTACAGTAGCCGAAGACTCAACGCGCTTCGCGCCCTATCGCCACGCGCACTCGCACTtcatcac > 2:28171/4‑148 (MQ=255) aTCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGACGGATCGAACGCCGGGCGAGTGATGGCCGCACGCCCCCTCACCCCCCTGCAGCCTTCACCCGATTCGCGCTCTTTCGCCCGGCACCCCACCAGtcactcaa > 2:796557/1‑142 (MQ=255) ccTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGCCGCCGAAGCCTTCACCCGCTTCGCGCTCCTTCGCCCAGCGCCCTATCAGTTCATCAAGCGACg > 1:877055/1‑149 (MQ=255) | GTTTTTCCAGTTCGGCGTTAGTTTCCGCCAGCGCCAGAATGCGATCTACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCACCCGCTTCGCGCTCTTTCGCCCAGCGCCCTATCAGTTCATCAAGCGACG > NC_000913_3_pae_tpiA/2888222‑2888514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |