New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 4056496 =NA (NA)4 (0.070) 4/262 8.9 2.6% noncoding (26/85 nt) REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_pae_tpiA 4056530 = 152 (2.520)noncoding (60/85 nt) REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 170 total aligned reads displayed.

TCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCT  >  NC_000913_3_pae_tpiA/4056349‑4056644
                                                                                                                                                   |                                                                                                                                                    
tcCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTc                                                                                                                                                     >  1:376937/1‑149 (MQ=255)
  cTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCg                                                                                                                                                   >  1:458398/1‑149 (MQ=255)
   tGAACAGGTTGCATCATTTTAGTGCATTTTAGCTTTTTACTGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCTCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg                                                                                                                                                  <  2:892079/149‑1 (MQ=255)
    gAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGc                                                                                                                                                 >  2:762799/1‑149 (MQ=255)
    aaaCCGGTTGCAACATTTTAGTCCATCATAGCTTTTTAGGGATAAAGAGCGCGGAGCATGAGAGAAAAGAAAAAAAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGc                                                                                                                                                 <  2:310844/148‑1 (MQ=255)
     aaCAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGcc                                                                                                                                                >  1:1042844/1‑149 (MQ=255)
     aaCAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGcc                                                                                                                                                <  1:185263/149‑1 (MQ=255)
        aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc                                                                                                                                             >  1:991122/1‑149 (MQ=255)
        aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc                                                                                                                                             <  2:373884/149‑1 (MQ=255)
        aGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAAAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc                                                                                                                                             <  2:505701/149‑1 (MQ=255)
               aCCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTa                                                                                                                                              <  1:741760/141‑1 (MQ=255)
                    tttAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAcc                                                                                                                                 <  1:460536/149‑1 (MQ=255)
                         tGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa                                                                                                                            >  1:650272/1‑149 (MQ=255)
                           cATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAgg                                                                                                                          >  2:142651/1‑149 (MQ=255)
                            aTTATAGCTTTTTACGGATAAAAAGCGCGAGGCAGAAGAGAATTGACGGAGAACAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACTACATCATCACCGTGTAgga                                                                                                                         >  1:562496/1‑148 (MQ=255)
                            aTTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGc                                                                                                                         >  1:734465/1‑149 (MQ=255)
                                 aGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACCAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGAt                                                                                                                    >  2:98827/1‑149 (MQ=255)
                                   cTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATaa                                                                                                                  >  1:408905/1‑149 (MQ=255)
                                     ttttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCAGGATAAGa                                                                                                                <  2:196277/149‑1 (MQ=255)
                                       ttACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCACCACCGTGTAGGCCGGATAAGACg                                                                                                              >  1:1007019/1‑149 (MQ=255)
                                        tACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGc                                                                                                             <  1:52096/149‑1 (MQ=255)
                                              tAAAAAGCGCGAAGCATCATAGACGTGAATGTGAAAAAAGTCCATGCAGAGATGTGTTACAGATAGCTGACAAGCTTTACGTTGGAGAGTGACTCTCTTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGTCGCATTTGc                                                                                                       <  2:39713/149‑1 (MQ=255)
                                              tAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGc                                                                                                       >  1:206603/1‑149 (MQ=255)
                                              tAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGc                                                                                                       <  1:1044126/149‑1 (MQ=255)
                                               aaaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCg                                                                                                      >  2:560109/1‑149 (MQ=255)
                                                aaaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGt                                                                                                     <  2:458398/149‑1 (MQ=255)
                                                 aaaGCGCGAAGCATCAGAGAATTGACGGCGTAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc                                                                                                    >  1:275142/1‑149 (MQ=255)
                                                 aaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa                                                                                                                            >  1:65407/1‑125 (MQ=255)
                                                 aaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc                                                                                                    >  1:86296/1‑149 (MQ=255)
                                                 aaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc                                                                                                    <  1:989546/149‑1 (MQ=255)
                                                 aaaGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc                                                                                                    <  1:1015875/149‑1 (MQ=255)
                                                          aGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGc                                                                                           <  2:949534/149‑1 (MQ=255)
                                                              tCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCTTCGCATCCGGCGTGa                                                                                       >  1:238546/1‑149 (MQ=255)
                                                              tCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                                                                                       <  1:142651/149‑1 (MQ=255)
                                                              tCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                                                                                       >  2:1041453/1‑149 (MQ=255)
                                                                    aaTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCt                                                                                 <  1:337566/149‑1 (MQ=255)
                                                                    aaTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCt                                                                                 <  1:854806/149‑1 (MQ=255)
                                                                     aTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt                                                                                <  1:1132461/149‑1 (MQ=255)
                                                                          cGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATTGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACACATCTGCGGCGCTTCCGGCGTGATGTGTTTGGCAc                                                                           <  2:391301/149‑1 (MQ=255)
                                                                          cGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa                                                                                                                            <  1:821112/100‑1 (MQ=255)
                                                                           ggAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGGGAGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc                                                                          >  2:734749/1‑149 (MQ=255)
                                                                           ggAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtaccgacc                                                                          >  2:519266/1‑142 (MQ=255)
                                                                             agaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa                                                                        >  2:427078/1‑149 (MQ=255)
                                                                             agaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa                                                                        <  2:1007019/149‑1 (MQ=255)
                                                                             agaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa                                                                        >  1:870704/1‑149 (MQ=255)
                                                                             agaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGCGCTTGCCACCGa                                                                        >  1:636226/1‑149 (MQ=255)
                                                                              gaAAAAAGCCCATGCAGAGATGGGCTACAGATAGTTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt                                                                       <  2:778606/149‑1 (MQ=255)
                                                                                 aaaaGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc                                                                    >  2:682416/1‑149 (MQ=255)
                                                                                 aaaaGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc                                                                    >  2:264172/1‑149 (MQ=255)
                                                                                        cATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTg                                                             >  1:179019/1‑149 (MQ=255)
                                                                                           gCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa                                                          <  1:13210/149‑1 (MQ=255)
                                                                                            cAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCag                                                         <  2:843872/149‑1 (MQ=255)
                                                                                             agagATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACATGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCaga                                                        <  2:211390/149‑1 (MQ=255)
                                                                                                gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGAc                                                     <  2:86296/149‑1 (MQ=255)
                                                                                                   gggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAgg                                                  >  2:51178/1‑149 (MQ=255)
                                                                                                    ggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatc                                                                                                                                       >  1:897866/1‑63 (MQ=255)
                                                                                                         cacaTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaaa                                            <  2:802880/146‑1 (MQ=255)
                                                                                                         cAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaaa                                            <  1:362136/149‑1 (MQ=255)
                                                                                                         cAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaaa                                            <  1:1126313/149‑1 (MQ=255)
                                                                                                         cAGATAGCTGACAAACCTCACGTTGGAGGTGTACTCACCTGGTCCGGCCTACCACATCATGCCCGTGTAGGCCGGATAAGTCGCATTTGCATCGCATCTGGCGTGATGTCCTTGCCACCGATACCACGCCTGCCAGAGACAGGCGaaaa                                            <  1:937134/149‑1 (MQ=255)
                                                                                                           gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGt                                          <  1:568478/149‑1 (MQ=255)
                                                                                                                cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca                                                                                                                                         >  1:140119/1‑49 (MQ=255)
                                                                                                                cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca                                                                                                                                         <  2:140119/49‑1 (MQ=255)
                                                                                                                cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca                                                                                                                                         <  2:140376/49‑1 (MQ=255)
                                                                                                                cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCGTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCa                                     >  2:904194/1‑149 (MQ=255)
                                                                                                                 tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCAc                                    >  1:569819/1‑149 (MQ=255)
                                                                                                                   aCAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCGCgg                                  >  1:85522/1‑149 (MQ=255)
                                                                                                                     aaaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGACTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCa                                >  2:130468/1‑149 (MQ=255)
                                                                                                                      aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCaa                               <  2:192921/149‑1 (MQ=255)
                                                                                                                      aaCGTCACGGTGGAGCGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGGCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCaa                               <  1:117510/149‑1 (MQ=255)
                                                                                                                        cTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGAAACt                             >  1:48108/1‑149 (MQ=255)
                                                                                                                          tCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt                                                                                                           >  2:1061870/1‑69 (MQ=255)
                                                                                                                            ccGTTGGAGAGCGACGCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTaaaa                         <  1:998488/148‑1 (MQ=255)
                                                                                                                            aCGTGGGAGAGCGACTCACCGGCTCCGGCCTACTCCATCATCACCGTTTAGGTCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCTAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTaaaa                         <  2:452019/149‑1 (MQ=255)
                                                                                                                              gTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAaca                       >  2:925922/1‑149 (MQ=255)
                                                                                                                               ttGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCGTGCCACCGATCCCAGGCCTGCTAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAacac                      >  2:1052987/1‑149 (MQ=255)
                                                                                                                                  gagaGCCACTCACCTGCCCCGGCCTACCACATGATCTCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTa                   <  1:777222/149‑1 (MQ=255)
                                                                                                                                   agagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGGTTCCACGGCAACTCAACCACTTAg                  >  1:42718/1‑149 (MQ=255)
                                                                                                                                    gagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGa                 <  2:734465/149‑1 (MQ=255)
                                                                                                                                      gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACg               <  1:535913/149‑1 (MQ=255)
                                                                                                                                        gACTCACCTGCTCTGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGa                 <  1:41653/145‑1 (MQ=255)
                                                                                                                                            cACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTgtag         <  2:758259/149‑1 (MQ=255)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATGCGACGCAAATGCGTCTTATCCGGc                                                                                           <  1:1090486/66‑1 (MQ=12)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                                                                                       >  2:440301/1‑70 (MQ=255)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa                                                                                       <  1:440301/70‑1 (MQ=255)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTgtcgt        >  2:1084112/1‑149 (MQ=255)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTg            <  2:112063/145‑1 (MQ=255)
                                                                                                                                             aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTg            >  1:112063/1‑145 (MQ=255)
                                                                                                                                               cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc                                                            <  2:1140787/95‑1 (MQ=255)
                                                                                                                                               cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTAc      >  1:961665/1‑149 (MQ=255)
                                                                                                                                               cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTAc      >  1:380470/1‑149 (MQ=255)
                                                                                                                                               cTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTCAGACCCCGTAGTAc      >  2:257706/1‑149 (MQ=255)
                                                                                                                                                tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACa     >  1:496698/1‑149 (MQ=255)
                                                                                                                                                 gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAg    <  2:569819/149‑1 (MQ=255)
                                                                                                                                                 gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAg    <  1:947577/149‑1 (MQ=255)
                                                                                                                                                 gCTCCGGCCTACCACATCATCAACGAGTAGGCCGGATCAAATGCATGCGATGCGCATCCGGCGTGCAGTGCTTCCCACCGGTCCCCGGCCCTGCAAAGACAGAAGAAGAGCGTCCACAGCAACTAGAACACTAAGACGgtgtcggaccg    >  2:92646/1‑142 (MQ=255)
                                                                                                                                                  cTCCGGCCTACTACACTATCACCGTGGAGGGCGGATAAGACGCATTTGCGCCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCAACGGCAACTAAAACACTTAGACGCTGTAGTACAGc   <  1:7685/149‑1 (MQ=255)
                                                                                                                                                   tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAAc                              >  2:1055425/1‑121 (MQ=255)
                                                                                                                                                   tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAAc                              <  1:1055425/121‑1 (MQ=255)
                                                                                                                                                   tCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCt  >  2:638048/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAACACTTAGACGCTGTAGTACAGCT  >  NC_000913_3_pae_tpiA/4056349‑4056644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.