New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1209618	62 (0.960)	5 (0.090)	5/252	8.0	6.6%	pseudogene (2/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
	?	NC_000913_3_pae_tpiA	2471897 =	86 (1.480)					pseudogene (226/579 nt)	yfdL	pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAACATCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTG  >  NC_000913_3_pae_tpiA/2471749‑2472042                                                                                                                                                     |                                                                                                                                                  ggAACATCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAg                                                                                                                                                   <  2:1028683/149‑1 (MQ=255) ggAACATCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAg                                                                                                                                                   <  2:330337/149‑1 (MQ=255)    aCATCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGtt                                                                                                                                                >  2:270830/1‑149 (MQ=255)      aTCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAGGGtttt                                                                                                                                              >  1:49183/1‑149 (MQ=255)      aTCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGtttt                                                                                                                                              >  1:451724/1‑149 (MQ=255)         aaTTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCga                                                                                                                                           <  1:453073/149‑1 (MQ=255)           ttGGCCCCCATTGCATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCgaga                                                                                                                                         <  1:718240/149‑1 (MQ=255)           ttGGCCCCCATTGAATAATTAAACCGGATCGCAATTTGTGATATCCAGTAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCgaga                                                                                                                                         <  1:219334/149‑1 (MQ=255)           ttGGCCACCATTGAATAATTAAACCGGATGGAAATTTAAGATATCTAGGAATTGAAGCAGAAAGTAAGCAAGTTCCCATATCAGGTTGCTGAGTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCgaga                                                                                                                                         <  1:841413/149‑1 (MQ=255)              gCCCCCATTGAATAATTAAACCGGATAGCAATTGTGGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGcc                                                                                                                                      >  2:1102802/1‑149 (MQ=255)               cccccATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCt                                                                                                                                     >  1:863520/1‑149 (MQ=255)                ccccATTGAATAATTAAAGCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCtt                                                                                                                                    <  2:752592/149‑1 (MQ=255)                  ccATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCtttt                                                                                                                                  <  1:923777/149‑1 (MQ=255)                    aTTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGc                                                                                                                                <  1:524593/149‑1 (MQ=255)                       gAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCAcc                                                                                                                             <  1:327035/149‑1 (MQ=255)                            atTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGACTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGcc                                                                                                                        <  2:117358/149‑1 (MQ=255)                            atTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATACCAGGAATCTAATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGcc                                                                                                                        >  1:729024/1‑149 (MQ=255)                             ttAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCg                                                                                                                       >  1:701887/1‑149 (MQ=255)                                aaCCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTcc                                                                                                                    >  1:1097907/1‑149 (MQ=255)                                   cGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTACGAGAGCCTTTTGCACACTGCCGTCCAAt                                                                                                                 >  2:765075/1‑149 (MQ=255)                                     gATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTTATGCTCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAAttt                                                                                                               <  1:1120036/149‑1 (MQ=255)                                        ggCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCTGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGat                                                                                                            <  1:1109808/149‑1 (MQ=255)                                          cAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGatat                                                                                                          >  1:341017/1‑149 (MQ=255)                                           aaTTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCACAAACCAAGGTTTTCGCGAGCCTTTTGCACCGTGCCGTCCAATTTGATATc                                                                                                         >  1:167015/1‑149 (MQ=255)                                           aaTTTTTGATATCCAGGAACTAAAGCCGCAGGCAAAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATGTCTTTTCGCCGCTTCTCCCAAACCACGGTTTTAGAGAGCCTTTTGCACCCTGCCGTCCCATTTGCTATc                                                                                                         >  2:534247/1‑149 (MQ=255)                                              ttttGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGcc                                                                                                      <  2:599261/149‑1 (MQ=255)                                                 tGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCaaa                                                                                                   <  2:451724/149‑1 (MQ=255)                                                     atCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAAGCAAGGTTTTCGAGAGCCTTTTTCACCGTGCCGTCCAATTTGATATCGCCAAACGGa                                                                                               <  2:860352/149‑1 (MQ=255)                                                      tCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATCCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGAt                                                                                              <  1:890767/149‑1 (MQ=255)                                                        cAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTc                                                                                            >  2:829378/1‑149 (MQ=255)                                                        cAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCACTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTc                                                                                            >  2:1098122/1‑149 (MQ=255)                                                         aGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGCTTCt                                                                                           >  2:61961/1‑149 (MQ=255)                                                           taaCTGAAGCAGAAAGCAAAAAACGACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTg                                                                                         <  2:167015/148‑1 (MQ=255)                                                            aaCTGAACGAGAAAGCATAAATCTACCCATATTATGTATCTGAGTCGTCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGTTTTTCGAGCGGCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGc                                                                                        <  2:774057/149‑1 (MQ=25)                                                               tGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGc                                                                                     <  2:1097907/149‑1 (MQ=255)                                                                 aaGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAGCGGATTCTTGCGGCtt                                                                                   >  1:75673/1‑149 (MQ=255)                                                                   gacgAAAGAATAAAACTACCCATATCAGGGATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTaa                                                                                 <  2:729024/146‑1 (MQ=255)                                                                   gCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCACACGGATTCTTGCGGCTTaa                                                                                 >  1:296082/1‑149 (MQ=255)                                                                     aGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAAca                                                                               >  2:167108/1‑149 (MQ=255)                                                                      gAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCACACCAAGGTTTTCGAGAGCCTTTTGAACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGACTTCAcag                                                                              >  2:401094/1‑149 (MQ=255)                                                                          gCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACagcagc                                                                          <  1:406012/149‑1 (MQ=255)                                                                            aTAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCCgcgc                                                                        >  1:976105/1‑149 (MQ=255)                                                                            aTAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAgcgc                                                                        >  2:212915/1‑149 (MQ=255)                                                                            aTAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAgcgc                                                                        >  1:123549/1‑149 (MQ=255)                                                                             tAAACCTACCCATATCAGGTATCTGATTCGCTCCTGTTCCTACATTTCTTTTAGCCGCTTCTCCAAAATCAAGGTTTTGGAGAGCGTGTTTGACTGTGCTGTGAGATTTGATATCGCCAAACGGTTTCTTGCGGCTTAACAGCAGCGCa                                                                       <  2:241271/149‑1 (MQ=21)                                                                             tAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCa                                                                       >  2:34263/1‑149 (MQ=255)                                                                             tAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCa                                                                       <  1:1080207/149‑1 (MQ=255)                                                                             tAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTACCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCa                                                                       <  1:951794/149‑1 (MQ=255)                                                                               aaaCTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACg                                                                     >  2:652334/1‑149 (MQ=255)                                                                                    aCCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAgcg                                                                <  1:829378/149‑1 (MQ=255)                                                                                      gtatatCAGGTATCTGTGTCGCCGCTGCCCCTACATTTCTTTTAGCCGCTTCTCACAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGcgcg                                                              <  2:74442/147‑1 (MQ=21)                                                                                      ccATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGAATTCTTACGGCTTAACAGCAGCCCACGAAGcacg                                                              >  1:73231/1‑149 (MQ=255)                                                                                      ccATATCAGGTATCTGATCCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGcgcg                                                              <  1:765075/149‑1 (MQ=255)                                                                                      cattatCAGGTATCTTATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGcgcg                                                              <  2:15668/146‑1 (MQ=255)                                                                                        atatCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCAAAACGGATTCTTGCGGCTTAACAGCAGCGCCCGAAGCGCGGt                                                            >  2:1132609/1‑149 (MQ=255)                                                                                          atCAGGTATTTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTaa                                                          <  1:270830/149‑1 (MQ=255)                                                                                          atCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAAcagca                                                                            >  2:1017911/1‑131 (MQ=255)                                                                                          atCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTaa                                                          >  2:1015221/1‑149 (MQ=255)                                                                                          atCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTaa                                                          <  2:632415/149‑1 (MQ=255)                                                                                          atCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTaa                                                          <  1:167108/149‑1 (MQ=255)                                                                                          atCAGGTAGCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAAcagca                                                                            <  1:1017911/131‑1 (MQ=255)                                                                                              ggTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAagcag                                                      <  2:889169/149‑1 (MQ=255)                                                                                              ggTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAagcag                                                      >  1:1053216/1‑149 (MQ=255)                                                                                                 aTCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTg                                                   <  2:266689/149‑1 (MQ=255)                                                                                                 aTCTGATTCGCCCCTGTCCCTACATTGCTTTGAGCCGCTTCTCCCAAACCAAGGTTTTCGAGGGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAATTGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTg                                                   <  2:1019380/149‑1 (MQ=25)                                                                                                  tCTGATTCGCCCCTGTCCCTACAGTTCTTTGAGCCGCTTCGCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTgg                                                  <  2:48311/149‑1 (MQ=255)                                                                                                     gATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTGTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCa                                               <  1:1015221/149‑1 (MQ=255)                                                                                                            cccTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATgccgcc                                        >  2:143675/1‑149 (MQ=255)                                                                                                              cTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGcccc                                      <  1:34263/149‑1 (MQ=255)                                                                                                              cTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGcccc                                      <  1:212915/149‑1 (MQ=255)                                                                                                                   ccTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTtctc                                 <  1:166301/149‑1 (MQ=255)                                                                                                                     tgcacttCTTTTGGCCGCTGCTCCCAACCCAAGCTTTGCCAGGGCCTGTTGCAGCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCa                               <  2:1092979/144‑1 (MQ=18)                                                                                                                     tACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGGCGTCCAATTTGATATCGCCACACGGATTCTTGCGGCTTAACAGCAGCGCACGAACCGTGGTAAGCAGCTGGTCATGCGGCCCCTTCTCCa                               >  2:442611/1‑149 (MQ=18)                                                                                                                     tACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCttaacac                               >  2:1137403/1‑144 (MQ=255)                                                                                                                     tACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATACGGCCCCTTCTccg                               >  2:736791/1‑148 (MQ=255)                                                                                                                      aCATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAg                              <  1:1094217/149‑1 (MQ=255)                                                                                                                       cATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAgg                             <  1:143675/149‑1 (MQ=255)                                                                                                                         tttCTTTTCGCCGCTCCTTCCAAACCGATGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTGGACATCGCCAAACGGATTCTTGCGGCTTATCAGCCGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCGTTCTCCAGGCt                           <  2:726122/149‑1 (MQ=18)                                                                                                                          ttCTTTGAGCCGCTTCGCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTg                          <  1:345166/149‑1 (MQ=255)                                                                                                                           tCTTTTGGCCGCTGCTCCCAAACCAGGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTgg                         <  2:119470/149‑1 (MQ=255)                                                                                                                            cTTTTAGCCGCTTCTCCCAAACCAAGGTTATCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGc                        >  1:848214/1‑149 (MQ=255)                                                                                                                             ttttAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCa                       >  2:153082/1‑149 (MQ=255)                                                                                                                                tAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCg                    <  1:652334/149‑1 (MQ=255)                                                                                                                                 aGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCgg                   >  2:1063675/1‑149 (MQ=255)                                                                                                                                  gCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGa                  <  1:1102802/149‑1 (MQ=255)                                                                                                                                   ccGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAg                 >  2:341967/1‑149 (MQ=255)                                                                                                                                      cTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGTACCGGAGGcc              <  1:1111763/149‑1 (MQ=255)                                                                                                                                       ttCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCt             >  1:916668/1‑149 (MQ=255)                                                                                                                                            ccAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAAcagca                                                                            <  1:234993/81‑1 (MQ=255)                                                                                                                                            ccAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAAcagca                                                                            >  2:234993/1‑81 (MQ=255)                                                                                                                                            ccAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCcaca        >  1:289789/1‑149 (MQ=255)                                                                                                                                             cAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACaa       >  1:753563/1‑149 (MQ=255)                                                                                                                                              aaaCCAATGTTTTCGGGCGCCTTTTGCACCGTGCCGTCTAATTTGTTATCGCCAAACGGATTGTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAAc      <  1:18033/149‑1 (MQ=17)                                                                                                                                                 ccAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTACTCCAGGCTGGCACCGGGGGCCTCCACAACGCt   <  2:934750/149‑1 (MQ=255)                                                                                                                                                  cAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTg  >  1:183979/1‑149 (MQ=255)                                                                                                                                                  cAAGGTTTTCGAGAGCCTTGTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTGCAGGCTGGCACCGGAGTCCTCCACAACGTTg  <  2:1016379/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGAACATCAATTGGCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCAAGGTTTTCGAGAGCCTTTTGCACCGTGCCGTCCAATTTGATATCGCCAAACGGATTCTTGCGGCTTAACAGCAGCGCACGAAGCGCGGTAAGCAGCTGGTCATGCCGCCCCTTCTCCAGGCTGGCACCGGAGGCCTCCACAACGCTG  >  NC_000913_3_pae_tpiA/2471749‑2472042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.