New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2155287 =	37 (1.010)	4 (0.110)	4/272	4.8	10.8%	coding (25/3123 nt)	mdtB	multidrug efflux system, subunit B
	?	NC_000913_3_pae_tpiA	2155309 =	31 (0.890)					coding (47/3123 nt)	mdtB	multidrug efflux system, subunit B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACAGACGGCATTGATCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGACTATCCGACCATTCAGGTG  >  NC_000913_3_pae_tpiA/2155140‑2155430                                                                                                                                                    |                                                                                                                                                gACAGACGGCATTGATCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGAGCCACTACTACGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGcac                                                                                                                                                >  1:199793/1‑149 (MQ=255) gACAGACGGCATTGACCGCCTGACCGAAGGGGCCAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGcac                                                                                                                                                <  2:550370/149‑1 (MQ=255)    aGACGGCATTGATCTCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCAAGAGCGCCACTACTCCGCAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAgg                                                                                                                                             <  1:595039/149‑1 (MQ=255)     aaCGGCATGCATCGCCTGAACGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCAGCGAAAAAACGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAggc                                                                                                                                            <  2:589881/148‑1 (MQ=255)      aCGGCATTGATCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAggcg                                                                                                                                           >  1:17421/1‑149 (MQ=255)       cGGCATTGATCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGTAACACGCTCCTAATGCAGGTGTTACCCCCGAGCAGCACAggcgg                                                                                                                                          >  1:87004/1‑149 (MQ=255)                tCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTcgcg                                                                                                                                 >  1:589015/1‑149 (MQ=255)                         cGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACCACTCCGGAAGAGAAAGCCACCAGCCGCGAAGCCGCGAAAAAAGCAGCACGCTCATAATACGGGTGTTACCCCCGGCCCGCCAAGGCGCCCCGTCGCGCCTGcttgt                                                                                                                        >  2:158208/1‑147 (MQ=255)                          gAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTttatt                                                                                                                       <  2:259220/149‑1 (MQ=255)                           aaGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCCCAGGCGGCCCTTCGCGCCCGtatctaa                                                                                                                      >  2:286107/1‑143 (MQ=255)                                 cGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTc                                                                                                                <  2:17421/149‑1 (MQ=255)                                   aaaGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCGACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCGCGTCGCGCCTGTTTATTATGCGTccg                                                                                                              >  1:326518/1‑148 (MQ=255)                                               gtggAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGAACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCCGTTGCCACCACg                                                                                                  >  2:119831/1‑149 (MQ=255)                                                 ggAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACgct                                                                                                >  2:536948/1‑149 (MQ=255)                                                 ggAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACgct                                                                                                <  1:536948/149‑1 (MQ=255)                                                  gAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACgctg                                                                                               >  1:250923/1‑149 (MQ=255)                                                       ccAGAGCGCCACTACTCCGGAAGATAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCGCGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGAt                                                                                          <  1:610454/149‑1 (MQ=255)                                                            gcgcCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCGGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGAtggtgg                                                                                     <  1:616721/149‑1 (MQ=255)                                                               ccACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGa                                                                                  >  2:518392/1‑149 (MQ=255)                                                                cACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGCGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGAt                                                                                 >  1:551827/1‑149 (MQ=255)                                                                 actactCCGGAAGGGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATc                                                                                <  2:452282/149‑1 (MQ=255)                                                                    tacccGGAAGAGAAAGCCACCGGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTa                                                                             <  2:551827/146‑1 (MQ=255)                                                                    actCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTa                                                                             <  1:524780/149‑1 (MQ=255)                                                                      tCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACt                                                                           >  2:429918/1‑149 (MQ=255)                                                                         ggAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGc                                                                        >  1:335830/1‑149 (MQ=255)                                                                             gagaAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCggg                                                                    >  1:108644/1‑149 (MQ=255)                                                                                     caccaGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCgg                                                            <  1:433050/149‑1 (MQ=255)                                                                                                  tACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTg                                               <  1:518392/149‑1 (MQ=255)                                                                                                        aaaaaaGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCACTGCCCGtt                                         >  1:451434/1‑149 (MQ=255)                                                                                                              ggAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGGCGCGCCTGTGTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGgcg                                   <  1:66811/149‑1 (MQ=255)                                                                                                                         cTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGGCCGTCGCTCCGGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGt                        <  1:178277/149‑1 (MQ=255)                                                                                                                           gATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTgg                      >  1:586188/1‑149 (MQ=255)                                                                                                                            ctccAGGTGTTACCCCCGAGCGCGGCAGGCGGCACGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCACGCCCTGTTTGTTTCGGCGCTGCCGGAAGTGGa                     >  2:457588/4‑149 (MQ=255)                                                                                                                            aTGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGa                     <  1:585835/149‑1 (MQ=255)                                                                                                                                         ccccGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGACTATCCGACCAtt        >  1:450539/1‑149 (MQ=255)                                                                                                                                              agcagcACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGACTATCCGACCATTCCggt   >  1:117533/1‑149 (MQ=255)                                                                                                                                               gcagcaCAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGACTATCCGACCCTTCAggtg  >  1:467939/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                GACAGACGGCATTGATCGCCTGACCGAAGGGGCGAAAGTGGAAGTGGTGGAAGCCCAGAGCGCCACTACTCCGGAAGAGAAAGCCACCAGCCGCGAATACGCGAAAAAAGGAGCACGCTCCTGATGCAGGTGTTACCCCCGAGCAGCACAGGCGGCCCGTCGCGCCTGTTTATTATGCGTCCTGTGGCCACCACGCTGCTGATGGTGGCGATCTTACTCGCCGGGATTATCGGTTATCGCGCCCTGCCCGTTTCGGCGCTGCCGGAAGTGGACTATCCGACCATTCAGGTG  >  NC_000913_3_pae_tpiA/2155140‑2155430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.