New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 398661435 (0.960)4 (0.120) 4/264 4.7 10.5% noncoding (183/207 nt) glmZ sRNA antisense activator of glmS mRNA, Hfq‑dependent
?NC_000913_3_pae_tpiA = 3986622 36 (1.070)noncoding (191/207 nt) glmZ sRNA antisense activator of glmS mRNA, Hfq‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCGGAATGACGCAGAGCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCA  >  NC_000913_3_pae_tpiA/3986479‑3986762
                                                                                                                                       |                                                                                                                                                    
tCCGGCATGACGCAGAGCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACACGCCGGGGTTAACGCCTGCTCCGTAATAAGAGCa                                                                                                                                         <  1:155741/149‑1 (MQ=255)
        gccGCAGAGCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGtttt                                                                                                                                 <  1:94420/147‑1 (MQ=255)
           gCAGAGCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGttttttt                                                                                                                              <  1:240577/149‑1 (MQ=255)
             agagCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCCCATAAGACACCATGGACACAACGTTGAGTTAAGCACCCACTTGTTGTCATACAGATCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTAt                                                                                                                            <  2:97398/149‑1 (MQ=255)
                      tACGGTGCTTATCGTACACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGa                                                                                                                   <  2:505079/149‑1 (MQ=255)
                         ggTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATCAGAGCAGGCGTTTTTTTATGTCTCAGGAAgg                                                                                                                >  2:397799/1‑149 (MQ=255)
                                      cACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGtttt                                                                                                                                 <  1:586542/119‑1 (MQ=255)
                                      cACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGtttt                                                                                                                                 >  2:586542/1‑119 (MQ=255)
                                         tGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTctta                                                                                                                                                   <  2:340392/98‑4 (MQ=255)
                                         tGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTctta                                                                                                                                                   >  1:340392/1‑95 (MQ=255)
                                                  tCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTg                                                                                       <  1:102410/149‑1 (MQ=255)
                                                  tCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTg                                                                                       >  1:34520/1‑149 (MQ=255)
                                                    gCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTgag                                                                                     >  1:624330/1‑149 (MQ=255)
                                                      tgaTGCCTCATCAGAGATCATGGACACAACGTTTAGTGAACGCCCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGaa                                                                                   <  2:48154/147‑1 (MQ=255)
                                                           ccTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGTTGATTGCCTCCGGGTGAGGAGTAac                                                                              >  1:236654/1‑149 (MQ=255)
                                                             tcatcaGACACCATGGACACAACGTTGAGTGAAGCACCCACTTCTTGTCATACAGACCTGTTTTAACGCCTGCCCCGTAATAAGAGCAGGCGTCTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCTGGTGAGCAGGCacta                                                                            >  2:112069/1‑149 (MQ=255)
                                                               atcaGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAactact                                                                          >  2:33699/1‑149 (MQ=255)
                                                                      acCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCgg                                                                   >  1:352443/1‑149 (MQ=255)
                                                                       ccATGGACACAACGTTGAGTGAAGCCCCCACTTGTTGTAATACAGACCTGTTTTAACGCCTGGTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCggg                                                                  <  2:380088/149‑1 (MQ=255)
                                                                            gACACAACGTTGGGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCCCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTAtt                                                             <  1:208449/149‑1 (MQ=255)
                                                                            gACACAACGTCGAGTTAAGCACCCACTTTTTGTCATACAGACCTGTTTTAACGCCTGCTTCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTAtt                                                             <  2:514947/149‑1 (MQ=255)
                                                                             acacAACGTTGAGTGAAGCACCGACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTc                                                            <  2:217901/149‑1 (MQ=255)
                                                                                    gTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACg                                                     >  1:378995/1‑149 (MQ=255)
                                                                                      tGAGGGAACCCCCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGtt                                                   <  1:185019/149‑1 (MQ=255)
                                                                                              gCACCCACTTGTTGTCATACAGACCTGTTTGATCGCCTGCTCCGGTATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCaa                                           <  1:283095/149‑1 (MQ=255)
                                                                                                        gttgtCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCCCGa                                 >  2:440285/1‑149 (MQ=255)
                                                                                                           gtCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGcgccgc                              >  1:137266/1‑149 (MQ=255)
                                                                                                               tACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGCCGCATAg                          >  1:101636/1‑149 (MQ=255)
                                                                                                               tACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAg                          <  2:410470/149‑1 (MQ=255)
                                                                                                               tACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGGTAACATCAAACCGTCGCGACGCAtgg                          >  1:238740/1‑147 (MQ=255)
                                                                                                               tACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTATGCAACGTTAACATCAAACCGTCGCGACGCATAg                          >  1:101707/1‑149 (MQ=255)
                                                                                                                              aCGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCg           <  2:624330/149‑1 (MQ=255)
                                                                                                                               cGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCCAACCGTCGCGACGAATAGCTGCGGCTTCTTCCgg          >  1:185830/1‑149 (MQ=255)
                                                                                                                                gCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCgac         >  1:290224/1‑147 (MQ=255)
                                                                                                                                  cTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCtt       <  2:34520/149‑1 (MQ=255)
                                                                                                                                  cTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCtt       >  1:461803/1‑149 (MQ=255)
                                                                                                                                       ccGTAATAAGAGCAGGCTTTTTATTATATATCAGGAAAGCGCTGGACGTGCTTGCCTCCGGGGGTGAAGGAAATAATGTGGCTGGTTATTCTGCAACTTTAACATCAAACCGTCGCGACGCGTAGCGGCATCTTCCTCCGGCTTGTGCa  <  2:419645/149‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                                    
TCCGGAATGACGCAGAGCCGTTTACGGTGCTTATCGTCCACTGACAGATGTCGCTTATGCCTCATCAGACACCATGGACACAACGTTGAGTGAAGCACCCACTTGTTGTCATACAGACCTGTTTTAACGCCTGCTCCGTAATAAGAGCAGGCGTTTTTTTATGTATCAGGAAGGCCCCGGAGGTGCTTGCCTCCGGGTGAGAAGGAACTACTGTGGCGGGTTATTCTGCAACGTTAACATCAAACCGTCGCGACGCATAGCTGCAGCTTCTTCCGGCTTGTGCA  >  NC_000913_3_pae_tpiA/3986479‑3986762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.