New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1911650 =	51 (1.590)	5 (0.170)	4/260	3.9	9.7%	intergenic (+1/+45)	yebQ/htpX	putative transporter/putative endopeptidase
	?	NC_000913_3_pae_tpiA	1911680 =	46 (1.570)					intergenic (+31/+15)	yebQ/htpX	putative transporter/putative endopeptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGCGTCCTGATCGACGCGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1911675‑1911650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcgctttttAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG  >  NC_000913_3_pae_tpiA/1911680‑1911826                                                                                                                                                                               AGCGCGTCCTGATCGACGCGCTTTTGTGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCGGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAAAAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAAAGC                          >  1:256028/1‑149  GCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACACCTCACTGAGCGATTTAGACTTACCCTTAATGCGGACAGCC                         >  2:317680/1‑149  GCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTC                                                                                                                       >  1:481070/1‑55  GCGCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTC                                                                                                                       <  2:481070/55‑1    GCGTCCTGATCGACGCGCTTTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTCTCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTAACGTTAATGCAGAGAGCCAT                       >  1:318072/1‑149                      TTTTTAGTATTTCCTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTG     <  1:326018/149‑1                       TTTTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGC    >  1:355450/1‑149                         TTAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAACGGCGAGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTATTGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG  >  1:77057/1‑149                                                                                                                                                                               AGCGCGTCCTGATCGACGCGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1911675‑1911650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcgctttttAGTATTTACTTCATATTACTTCAGGTATTCACCCGTACGCAGAGCTTCAATTCGTTTATCCAGCGGCGGGTGGGTCATGAACAACTCACTGAGCGATTTCGACTTACCGTTAATGCAGAGAGCCATCATGCTGGTTGCTTCTTGCGG  >  NC_000913_3_pae_tpiA/1911680‑1911826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.