New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 176976	NA (NA)	4 (0.140)	4/260	3.9	NA	noncoding (8/19 nt)	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 176979	NA (NA)					noncoding (11/19 nt)	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCTGCAATATCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGAAAAT  >  NC_000913_3_pae_tpiA/176834‑177124                                                                                                                                               |                                                                                                                                                     ccTGCAATATCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTAt                                                                                                                                                <  2:698/149‑1 (MQ=255)   tGCAATATCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGTTCAACTATcc                                                                                                                                              >  1:562679/1‑149 (MQ=255)   tGCAATATCTGGTCGGCGGTTCCGTTGATGATACCGAAGGTCTGGAACGTTCTCGTTTCATCGTGACCAACCAGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTATTATCTAATCTGTTGTTCATGTGCCGGATAAACTATcc                                                                                                                                              >  2:154555/1‑149 (MQ=255)     cAATATCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCgg                                                                                                                                            <  2:308594/149‑1 (MQ=255)        tatCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATTTGCCTGTTAAACTATCCGCcac                                                                                                                                         >  2:50870/1‑149 (MQ=255)             ggTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtctt                                                                                                                                    >  2:553207/1‑149 (MQ=255)             ggTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtctt                                                                                                                                    <  1:553207/149‑1 (MQ=255)              gTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc                                                                                                                                   >  1:470139/1‑149 (MQ=255)                cggcggTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctc                                                                                                                                 <  1:118719/149‑1 (MQ=255)                               tgataCCGAAGTTCCGGATGGTGTTCGTTTCATCGTGGCCTACCCGATCGTGACAAGCGCCTGCGGTGGCGGGTCTGCCTGTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt                                                                                                                  <  2:301195/147‑1 (MQ=255)                                     cGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGTTTCTTCCTTTAGTATCTCATCTATTGTTCCTGTGCCGGAAAGACTATCCCGCACATCTTCTCTCTGCAACGCCCCTCCCCATc                                                                                                            >  2:32150/1‑149 (MQ=255)                                             tGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACACTAGCACACATTGTCTCTCTTCAACGCCCATTCTCATCCAgcgcca                                                                                                    >  1:13686/1‑147 (MQ=255)                                             tGGAAGGTTCTCGATTCATCGTGACCTACCCGAACGCGAAAAGCACCTGCTGTTGCGGTTCTTCCTTTAGTATCGAATCAGTTCTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACACCCATTCTCAGCCAGCGCaa                                                                                                    >  1:465508/1‑149 (MQ=255)                                              ggAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa                                                                                                   >  2:33659/1‑149 (MQ=255)                                               gAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATagt                                                                                                                                                    >  2:264261/1‑97 (MQ=255)                                               gAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATagt                                                                                                                                                    <  1:264261/99‑3 (MQ=255)                                               gAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCCACGCCCATTCTCATCCAGCGAAAAc                                                                                                  >  1:249162/1‑149 (MQ=255)                                                     tctcGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCACCGCCCATTCTCATCCAGCGCAAACGTCGGt                                                                                            >  2:273150/1‑149 (MQ=255)                                                              aTCGTGACCAACCCGAACGCGAACAGCACCTGCGGTTGCCGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATACATCGCAAACGTCGGTAGCTTAAGa                                                                                   <  2:465508/149‑1 (MQ=255)                                                                  tGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGc                                                                                                                                           >  2:458680/1‑89 (MQ=255)                                                                  tGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGc                                                                                                                                           <  1:458680/89‑1 (MQ=255)                                                                    aCCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCaa                                                                             <  1:64905/149‑1 (MQ=255)                                                                    aCCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAAATGCCaa                                                                             >  1:364534/1‑149 (MQ=255)                                                                      cAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACg                                                                           >  1:351015/1‑149 (MQ=255)                                                                         cccGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCACTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAAt                                                                        <  1:537482/149‑1 (MQ=255)                                                                                tcgAAAAGCACCTGCGGTGGCGGTTCTTTCTTTAGTATCTAATCTGTTGTTCATGTGCCTGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAgccgcc                                                                 <  2:32615/148‑1 (MQ=255)                                                                                        ccccggtggttgcggtgCTTACGTTAGTATCTAATCTGTGTGTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAAt                                                         <  2:509837/142‑1 (MQ=255)                                                                                                  tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCACGATAAACTAGCCGGCACATCTTCTCTCTTCAAGGCCCATTCTCCGCCAGCCCAAACGGCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTc                                               <  1:133575/149‑1 (MQ=255)                                                                                                      gttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATcc                                                                                                           <  2:208728/85‑1 (MQ=255)                                                                                                      gttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATcc                                                                                                           >  1:208728/1‑85 (MQ=255)                                                                                                         cttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCa                                        >  2:288616/1‑149 (MQ=255)                                                                                                         cttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCa                                        >  1:200365/1‑149 (MQ=255)                                                                                                            ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAGCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGc                                     <  1:75573/149‑1 (MQ=255)                                                                                                               ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCca                                  <  1:263914/149‑1 (MQ=255)                                                                                                                      cTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACt                           <  2:200365/149‑1 (MQ=255)                                                                                                                         aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGc                        <  2:375280/149‑1 (MQ=255)                                                                                                                                        gCCGCATAACCTACCCAGCACATCTGCGCTCTTCAACGCCCATTCTCATCTAGAGCAAACGCCGGTAGCTTAAGATGCTAACGATTCCAGGCTTGCTGAATCCATAGTTGCACGACCATGCCCATTCTACCGGCTTGTTCCAGTGGTAc         <  2:547735/149‑1 (MQ=255)                                                                                                                                              tAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGaaaa   <  1:50870/149‑1 (MQ=255)                                                                                                                                              tAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGaaaa   <  1:273150/149‑1 (MQ=255)                                                                                                                                               aaaCTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGAAAAt  <  1:288616/149‑1 (MQ=255)                                                                                                                                               aaaCTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGAAAAt  <  2:470139/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     CCTGCAATATCTGGTCGGCGGTTCCGTTGATTATACCGAAGGTCTGGAAGGTTCTCGTTTCATCGTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATGCCAACGAATAGCCGCCAGCCGAATCAATAGCGTCACGACCATGCCCATCATACTGGCTGTTTCCAGTGGTACGGAAAAT  >  NC_000913_3_pae_tpiA/176834‑177124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.