New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3365284	46 (1.440)	5 (0.160)	5/272	3.6	10.4%	pseudogene (100/367 nt)	yhcE	pseudogene fragment; interrupted by IS5
	?	NC_000913_3_pae_tpiA	= 3365294	42 (1.370)					pseudogene (110/367 nt)	yhcE	pseudogene fragment; interrupted by IS5
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATTTCCAACAACGGATTTGGATT  >  NC_000913_3_pae_tpiA/3365145‑3365432                                                                                                                                            |                                                                                                                                                     cAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAACtg                                                                                                                                             >  2:330455/1‑149 (MQ=255) cAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGAGGCCTGCTGCTGAACTTCGCCGTGGCCGCTCAGGAGGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGtc                                                                                                                                             >  2:356529/1‑148 (MQ=255) cAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGAAGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGGGTAATATCTCCAGTCGCATACAAAATATCGACTATGGCAAACGAAGtg                                                                                                                                             >  2:330739/1‑149 (MQ=255)           gtTCTATGAAACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGAAAACCAAATGCTGACATacg                                                                                                                                   >  2:156624/1‑149 (MQ=255)            ttCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATgcgc                                                                                                                                  >  2:165099/1‑149 (MQ=255)                         cAACAGGCGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGCAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCggg                                                                                                                     <  2:66430/149‑1 (MQ=255)                         cAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGCGATTTGCCATGGCTACTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCggg                                                                                                                     >  2:65119/1‑149 (MQ=255)                          aaCAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCgggg                                                                                                                    >  1:272588/1‑149 (MQ=255)                            cAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTAACCGGGGTa                                                                                                                  >  2:3856/1‑149 (MQ=255)                              ggAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGGTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCACCTATGGCAAACGAAGTGCAGCAATGCGCCAAGTTAACCggcgaaca                                                                                                                >  2:34976/1‑143 (MQ=255)                                    tcccAATGAAACGGACAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAacaaca                                                                                                          <  1:172569/147‑1 (MQ=255)                                    tGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAacaaca                                                                                                          <  1:165099/149‑1 (MQ=255)                                      ccAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGGCTATGGCAAACGAAGTGCTGCCATACGCCAAGTTGACCGGGGTAAAACAAcaca                                                                                                        >  1:489715/1‑149 (MQ=255)                                       cAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACaa                                                                                                       >  2:327297/1‑149 (MQ=255)                                        aaTGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAAcacact                                                                                                      >  2:139299/1‑147 (MQ=255)                                              aCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCGGCCTTGCGCAAAGCTGACGGGGGTAAAACAACCAAATTAGcag                                                                                                >  2:91131/1‑149 (MQ=255)                                              aCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGCGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTCCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTCGcag                                                                                                >  2:424589/1‑149 (MQ=255)                                               cGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGcaga                                                                                               <  1:101193/149‑1 (MQ=255)                                                    aatacgcggATGCCTGCTGCTGAACCTCGCCATGGCCGCTCCGGCAGCGTGTCCTCTCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGaa                                                                                          <  2:391704/142‑1 (MQ=255)                                                    aataaCAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGaa                                                                                          <  1:383477/149‑1 (MQ=255)                                                      taaCAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAAACAGAACa                                                                                        >  2:261741/1‑149 (MQ=255)                                                         cAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGATAACCGGGGTAAAACAACACAATTAGCGGACAGaaaactc                                                                                     >  2:435239/1‑144 (MQ=255)                                                          aGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCa                                                                                    >  1:409923/1‑149 (MQ=255)                                                            gATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACg                                                                                  >  1:174153/1‑149 (MQ=255)                                                             aTGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGc                                                                                 >  2:143284/1‑149 (MQ=255)                                                                 ctgctgctgAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATAGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCAGGCTGGt                                                                             >  2:340109/1‑149 (MQ=255)                                                                   gctgctgAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTaa                                                                           <  1:569716/149‑1 (MQ=255)                                                                     tgctgAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTaatg                                                                         <  1:508976/149‑1 (MQ=255)                                                                        tgAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTaatgcaa                                                                      >  2:451811/1‑149 (MQ=255)                                                                         gAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTaatgcaat                                                                     <  1:327297/149‑1 (MQ=255)                                                                          aaCTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGt                                                                                                                                              >  1:36283/1‑75 (MQ=255)                                                                          aaCTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGt                                                                                                                                              <  2:36283/75‑1 (MQ=255)                                                                             ttCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGa                                                                 >  1:195961/1‑149 (MQ=255)                                                                             ttCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATCCGa                                                                 >  1:122943/1‑149 (MQ=255)                                                                                gCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCa                                                              <  1:497050/149‑1 (MQ=255)                                                                                 ccATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAg                                                             >  1:285373/1‑149 (MQ=255)                                                                                            cAGGCAGAGTATAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTACCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCatat                                                  <  1:65119/149‑1 (MQ=255)                                                                                               gCAGAGTATAATATCTCCAGTAGCATACAAAATATCGACTATCGCAAACGAAGTGCTACCATGCAACAAGTTCACCGGGGGAAAAAAAGATAATTAACAGGCAGAACAATCACGCCGGCAAAGCAATGAGATAAGGACGCTCATATTCg                                               >  2:335677/1‑149 (MQ=255)                                                                                                cAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCgt                                              <  1:517067/149‑1 (MQ=255)                                                                                                 agacTGTAATATCTCCAGGAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTTATATTCgtg                                             <  1:241349/149‑1 (MQ=255)                                                                                                         atatCTCCAGTAGCATACAAACTATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACTCGGGTAAGGCAATGCGATCAGGACGCGCATATTCGGGTTCAGTTg                                     >  2:501735/1‑149 (MQ=255)                                                                                                                cAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCg                              <  1:451811/149‑1 (MQ=255)                                                                                                                       aTACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAatat                       >  1:2847/1‑149 (MQ=255)                                                                                                                          cAACATATCGACCATGGCAAACGCAGTGCTACCATGCGCCAAGTTGCACGGGGTAAAACAACACAATTAGCAGACAGAACCATCCCGCTGGTAATGCAATGCTATCAGAACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATATc                    <  2:7509/149‑1 (MQ=255)                                                                                                                               tatCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATTTCcaaca               >  1:471484/1‑149 (MQ=255)                                                                                                                                    accaaggCAAACCACGTGCTGCCATGCGCCAAGATGACCGTGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATTTCCAACAACgga          <  1:242830/144‑1 (MQ=255)                                                                                                                                            aaaCGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATTTCCAACAACggatttggatt  >  2:368434/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                     CAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTCCAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAATCACGCTGGTAATGCAATGCGATCAGGACGCTCATATTCGTGTTCAGTTGAATACCGCTAATATTTCCAACAACGGATTTGGATT  >  NC_000913_3_pae_tpiA/3365145‑3365432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.