New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4040816	NA (NA)	4 (0.130)	4/264	3.9	5.1%	intergenic (+180/+90)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913_3_pae_tpiA	= 4040840	80 (2.500)					intergenic (+204/+66)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCA  >  NC_000913_3_pae_tpiA/4040700‑4040987                                                                                                                                             |                                                                                                                                                    aaCGCTCTCCTGGGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAtt                                                                                                                                             <  1:212174/149‑1 (MQ=17) aaCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAtt                                                                                                                                             >  2:255561/1‑149 (MQ=32)  aCGCTCTCCTGAGTCGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATTAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTg                                                                                                                                            <  1:261554/149‑1 (MQ=17)    gCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGgc                                                                                                                                          >  1:54045/1‑149 (MQ=34)    gCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCGTTTTGCATTGgc                                                                                                                                          >  1:193371/1‑149 (MQ=21)       ctcCTGAGTAGGACAAATCCGCCGGGAGCTGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCa                                                                                                                                       <  1:190177/149‑1 (MQ=37)        tcCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCAGTGGCGCAg                                                                                                                                      >  1:171925/1‑149 (MQ=25)        tcCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAACAACGGCCCGGAGGGTGGCGAGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGATGGATGGCCTTTTTGCATTGGCGCAg                                                                                                                                      >  1:513995/1‑149 (MQ=255)          cTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaa                                                                                                                                    >  1:330078/1‑149 (MQ=39)           tGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaa                                                                                                                                   >  2:330119/1‑149 (MQ=40)           tGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaa                                                                                                                                   >  2:2938/1‑149 (MQ=40)           tGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaa                                                                                                                                   >  1:338571/1‑149 (MQ=40)                   aCAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGcc                                                                                                                           >  1:545011/1‑149 (MQ=255)                    cAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg                                                                                                                          <  2:559569/149‑1 (MQ=255)                    cAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg                                                                                                                          <  2:560021/149‑1 (MQ=255)                    cAAATCCGCCGGCAGCGGACTTGAACGGTGCGAAGCAACAGCCCGGAGGGCGGCGGGAAGCACGCACGACATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCAGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg                                                                                                                          <  2:347009/149‑1 (MQ=14)                       agccgccgGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGAt                                                                                                                       <  2:114819/147‑1 (MQ=255)                          cgccgGGAGCAGATATGAACGTTGCGAAGCAACGGCCAGGAGGGGGCCCAGCAGGACGCCCGACAAAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCg                                                                                                                    <  1:298606/149‑1 (MQ=17)                           gccgGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGa                                                                                                                   <  2:111853/149‑1 (MQ=255)                                    ggATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCACCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGAATTGGCGCAGAAAAAAATGACGGATGCGACGCTGgcgc                                                                                                          >  1:5042/1‑149 (MQ=255)                                      aTTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCCGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGACAAAAATGCCGGATGCGGAGATGGCGCGt                                                                                                        >  1:522510/1‑149 (MQ=17)                                      aTTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGt                                                                                                        <  2:348392/149‑1 (MQ=255)                                       tttGAACGTCGCGAAGGAACGGCCGGGAGGTTTGCGGGGAGGACGCCCGGCATAAACTGCCAGGCATCAAATTAAGCAGCAGGGTATCCTGACGGCTGGCCTTTTTGCATTGGTGCCGAAAAAAATGCCGGATGCGTCGCTGGCGCGTc                                                                                                       <  2:278326/149‑1 (MQ=17)                                              gTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCa                                                                                                <  1:242566/149‑1 (MQ=255)                                               ttGCGAAGCAACGGCCCGGAGGGTGTCGGGCAGGACGCCCGTCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGTCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAg                                                                                               <  1:117642/149‑1 (MQ=255)                                                   gAAGCGACGGCCCGGAGGGCGGCTGGCAGGACGCCCGTCATAAACTGGCAGGCATCAAATTAAGCAGGAGGCCATCCTGAGGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTa                                                                                           <  2:325443/149‑1 (MQ=25)                                                        aaCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                                      >  1:305386/1‑149 (MQ=255)                                                        aaCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAACAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                                      >  1:95920/1‑149 (MQ=255)                                                         aCGGCCCGGAGGGTGGCGGGTAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCCCAGAAAAAAATGCCGGATGCGACGCTGGCGCGCCTTATCTAGGCTACTGTTg                                                                                     >  2:2767/1‑149 (MQ=18)                                                         aCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTg                                                                                     >  1:312149/1‑149 (MQ=255)                                                          cGGCGCGGGGGATGGCGGGAAGGACGCCCGCCATAGACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTCTTGCATTGGCGCAGAAAAAAAGGCCGGATGCGACGCTGGCGCGTCTTCTCCAGCCCACTCTTGc                                                                                    <  2:564261/149‑1 (MQ=21)                                                          cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCTAGCCTACTCTTGc                                                                                    <  2:54045/149‑1 (MQ=255)                                                          cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                                                    <  1:521397/149‑1 (MQ=255)                                                          cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                                                    <  1:100278/149‑1 (MQ=255)                                                          cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                                                    <  1:2938/149‑1 (MQ=255)                                                          cGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTGTTTGCACTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                                                    <  1:379522/149‑1 (MQ=255)                                                              ccGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCGAATTAAGCAGAAGGCCTTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAGAAATGCCGGATCCGACGCTGTCGCGTCTTATCCAGCCTACTCTTGCTTAt                                                                                <  1:481438/149‑1 (MQ=21)                                                                   gggTGGCGGGCAGGACGCCCGCCCTACACGGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGAGCAAAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGtt                                                                           <  2:545011/149‑1 (MQ=25)                                                                   gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGtt                                                                           >  1:429017/1‑149 (MQ=255)                                                                    ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTc                                                                          <  1:198824/149‑1 (MQ=255)                                                                       ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGc                                                                       >  2:564722/1‑149 (MQ=255)                                                                         cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtt                                                                     <  2:348742/149‑1 (MQ=255)                                                                         cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtt                                                                     >  2:453038/1‑149 (MQ=255)                                                                           ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                   <  1:424253/149‑1 (MQ=255)                                                                           ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                   <  2:305386/149‑1 (MQ=255)                                                                           ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                   <  2:338571/149‑1 (MQ=255)                                                                           ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                   <  1:354804/149‑1 (MQ=255)                                                                             cAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGc                                                                 <  2:330078/149‑1 (MQ=255)                                                                                  cgcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtcca                                                            <  1:549427/149‑1 (MQ=255)                                                                                     ccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactc                                                         >  2:266699/1‑149 (MQ=255)                                                                                      cgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcc                                                        <  2:558773/149‑1 (MQ=255)                                                                                        ccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTGTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                      <  1:218853/149‑1 (MQ=255)                                                                                        ccATAAACTGCCAGGCACCAAATTAAGGAGAAGGCCACCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                      <  1:103527/149‑1 (MQ=255)                                                                                         cATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                                     >  2:10017/1‑149 (MQ=255)                                                                                         cATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                                     <  1:267961/149‑1 (MQ=255)                                                                                          aTAAACTGCCAGGCATCAACTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGTGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacca                                                    <  1:540391/149‑1 (MQ=255)                                                                                          aTAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCAGTTCTGCTTTTGCATCCACTccacca                                                    >  1:387887/1‑149 (MQ=255)                                                                                           tAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTTGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCcaccac                                                   >  1:198536/1‑149 (MQ=255)                                                                                              aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCCTTCTTCATTTGCATCCACTCCACCACaaa                                                >  2:142085/1‑149 (MQ=255)                                                                                                tGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAAt                                              >  1:64708/1‑149 (MQ=255)                                                                                                  ccAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAAtag                                            >  1:401167/1‑147 (MQ=255)                                                                                                  ccAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATca                                            <  1:37938/149‑1 (MQ=255)                                                                                                   cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCCTCCACTCCACAACAAAATaag                                           >  2:365546/1‑149 (MQ=255)                                                                                                    aGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagc                                          <  1:485424/149‑1 (MQ=255)                                                                                                    aGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCACTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagc                                          <  1:179562/149‑1 (MQ=255)                                                                                                         tCAAATTAAGCAGAAGGCCATCCTGACGGGGGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGAGGCGACGCTGGCGCGTGTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCAACCACAGAATCagccagcc                                     >  2:240139/1‑149 (MQ=37)                                                                                                          cAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGccc                                    >  1:396087/1‑149 (MQ=255)                                                                                                               tAAGCAGAAGTCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCaa                               <  1:567330/149‑1 (MQ=255)                                                                                                                 aGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAca                             >  2:78872/1‑149 (MQ=255)                                                                                                                  gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                      <  1:349795/123‑1 (MQ=255)                                                                                                                  gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                      >  2:349795/1‑123 (MQ=255)                                                                                                                   cAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCAGTTTTGCTTTTGCATCCACTCCCCCACCAAATCAGCCAGCCCCTCAAcatc                           >  2:404567/1‑149 (MQ=255)                                                                                                                            aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATc                  >  2:533987/1‑149 (MQ=255)                                                                                                                                tGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGt              >  1:323707/1‑149 (MQ=255)                                                                                                                                    ggATGGCCTTTTTGGATTGGTGCAGAAAAAAATGCCGGATGCGCCGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATg          <  2:269935/149‑1 (MQ=255)                                                                                                                                       tGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGa       <  1:10017/149‑1 (MQ=255)                                                                                                                                        ggCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGAc      <  1:210409/149‑1 (MQ=255)                                                                                                                                        ggCCTTTTTGCATTGGCGCAGAAAAAAATGCAGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGAc      >  1:336500/1‑149 (MQ=255)                                                                                                                                          ccTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACAt    >  1:97145/1‑149 (MQ=255)                                                                                                                                            tttttGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCCGTAATGCGACATCa  >  2:439573/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                    AACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCA  >  NC_000913_3_pae_tpiA/4040700‑4040987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.