New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4040683	86 (1.440)	12 (0.200)	7/286	7.0	15.9%	intergenic (+47/+223)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913_3_pae_tpiA	= 4213078	42 (0.710)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCA  >  NC_000913_3_pae_tpiA/4212944‑4213224                                                                                                                                       |                                                                                                                                                   tAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcccc                                                                                                                                      <  2:50052/149‑1 (MQ=255)         aaTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGGATCAAAGTAGAAAAACCCCGTTCGATa                                                                                                                              >  2:8656/1‑149 (MQ=255)         aaTTTGCCTGGCGGCAGTAGCGCGGACACACAAACGGACCCCATGCCGAACACAGAAGTGAAACCCCGTAACGCCGATGATAGCGTGACGTCTCCCCACACGCGAGCAGGGAACTGCCAGACATCAAATTAGAAAAAACCCCGCCCATa                                                                                                                              >  2:850305/1‑149 (MQ=2)                cTGGCGGCAGTAGCGTGGTGGTCCCACTGGACCCCATGACGAACGAAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCgg                                                                                                                       <  1:635480/149‑1 (MQ=17)                cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGACCATAAGGCCgg                                                                                                                       >  1:927198/1‑149 (MQ=255)                cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAAGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCgg                                                                                                                       >  1:186690/1‑149 (MQ=255)                        aGTAGCGGGGTGGCCCCACCTGACCACATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCTATGGTAGTTTGGGGTCTTCCCATCCGCGTGTATGGTATTTTCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttttt                                                                                                               <  2:789988/149‑1 (MQ=17)                         gTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTg                                                                                                              >  2:1002702/1‑149 (MQ=255)                           aGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTTCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCa                                                                                                            <  1:796543/149‑1 (MQ=255)                               cggcggTCCCCCCGGGCCTCATGCCCAACTCAGAAGTGAAACGCCGTAGGGCGGTTGGGCGTGTGGGGTCTCCCCCTGCGAGATTAGGTATCTGTCAGGTATCAAATTAGAAAAGCCCCGGTCCCTAAGGCCGGGGTTTTTTGCATATc                                                                                                        <  2:827255/149‑1 (MQ=17)                                    gtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCTCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAatta                                                                                                   <  1:119037/149‑1 (MQ=255)                                             gACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGCAGGGAACTGCCAGGCATCAAATTAGAAAACCCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATCTCCatgc                                                                                          >  2:55795/1‑148 (MQ=255)                                                cccATGCCGAACTCAGACGTTAAACGCCGTAGCGCCGATGGTAGTGTGGAGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGTGGTTTTTTGCAAATCAATTATTTTCAtgttga                                                                                       >  2:124118/1‑149 (MQ=18)                                                 tcATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGCACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                      <  1:439582/148‑1 (MQ=255)                                                 ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                      >  1:625747/1‑149 (MQ=255)                                                   aTGCCGAACTCAGAAGGGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAgg                                                                                    <  2:491989/149‑1 (MQ=255)                                                    tGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAggg                                                                                   >  1:634987/1‑149 (MQ=255)                                                      ccaaaCCCAAAAGTGAAACGGCGTAGCGCCGATGGTAGTGTGGGGCCACCACATGCGATAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGaa                                                                                 <  1:764016/146‑1 (MQ=25)                                                        gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCAGTCCATAAGGCCTGGGATTTTTGCATATCAATTATTTGCATGATGAAGGGAAtc                                                                               >  1:1005029/1‑149 (MQ=255)                                                            tCAGAAGTGAAAGGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAt                                                                           <  1:466989/149‑1 (MQ=255)                                                            tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCAATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAt                                                                           >  1:648383/1‑149 (MQ=255)                                                                aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGTGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                                                                       <  2:1032171/149‑1 (MQ=255)                                                                     aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAGATTCGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGAATATCAATTATTTCCCTGATGAAGGGAATCTCATGCCAGTTCt                                                                  >  2:1026181/1‑149 (MQ=25)                                                                       aCGCTGTAGCGTTGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGTGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                                <  1:701320/149‑1 (MQ=255)                                                                              aGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                                 >  1:869380/1‑93 (MQ=255)                                                                              aGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt                                                                                                                 <  2:869380/93‑1 (MQ=255)                                                                                       ggTAGTGTGGGGAGTCCCCATGCGATAGTAGGAAACCTGCAGGCATCAAATTAGAAAAACCCCTGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATTATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgtcg                                                <  1:487965/149‑1 (MQ=255)                                                                                                 ggTCTCCCCATGCGAGAGTAGGGAACTGCCATGCATCAAATTAGAAAGACCCTGGTCAACAAGGCCGAGGTTTTCTGCATATCAGTTATTTGCATGATGCAGGGAATCTCATGTCAGTTATGTATATCCAGCTTCCTCGTAATCAAAta                                      >  2:62538/1‑148 (MQ=37)                                                                                                     tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTg                                  >  1:96202/1‑149 (MQ=255)                                                                                                       cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTAATTGCATGATGAAGAGAAACTCAAGTAAGATCTGTATATCCAAATTCGTAGTAATCAAATTAATGtt                                >  1:238009/1‑149 (MQ=38)                                                                                                        ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTc                               <  2:96202/149‑1 (MQ=255)                                                                                                         caggCGAGGGTAGGGAACTGGCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTGTTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAGTCAAATTACTGTTcg                              <  2:855823/146‑1 (MQ=255)                                                                                                                gagTAGGGAACTGCCAGGCATCAAATTAGAAATACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGCAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCtt                       <  1:907766/149‑1 (MQ=255)                                                                                                                gagTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTATTAAAATGACTTTTTGCGATCtt                       >  2:650316/1‑149 (MQ=255)                                                                                                                        accTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAATGCCTGGCTTCTTTGCATAACAATTATTAGCATGATGAACGGAATCTCATTTCAGTTCTGTCTATCCAAATTCATCAGAATCAAATTCCTGCTCGCTATCTTCACAGcca               >  2:500709/3‑147 (MQ=255)                                                                                                                             ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGCAACCAAACGTg          >  2:687416/1‑149 (MQ=255)                                                                                                                               aGGCATCAAATTAGAAACACCCCGGTCCATAAGGCAGGAGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCAAAATTCGTCGTAATCAAATTACTTTTCTACATCTTGCAACAAACCGTGaa        >  2:306264/1‑149 (MQ=255)                                                                                                                               aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGaa        >  1:482167/1‑149 (MQ=255)                                                                                                                               aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGAATGATGGAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGaa        >  2:899548/1‑149 (MQ=255)                                                                                                                                 gCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATATCAGTTATGTATACTCATATTCGTCGGAATCAAATTACTGTTCTCGATCTTGAAAGCAAACGTGAAgt      <  2:729850/149‑1 (MQ=255)                                                                                                                                    tCAAATTAGAAAATCCCCGCTCCATAATGCCGTGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTc   <  1:367361/149‑1 (MQ=255)                                                                                                                                     cAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATTTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCa  <  1:142798/149‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                   TAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCA  >  NC_000913_3_pae_tpiA/4212944‑4213224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.