New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 323140828 (0.900)4 (0.130) 4/274 3.9 13.1% noncoding (157/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913_3_pae_tpiA = 3231427 26 (0.860)noncoding (176/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGC  >  NC_000913_3_pae_tpiA/3231264‑3231547
                                                                                                                                                |                                                                                                                                           
ggaaaCGCGTTATCCGGCCTACCTGTGCAAGCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGTCCTACATGTGTGTTCCCGTAGGTCGGATAAGa                                                                                                                                         <  1:2586/147‑1 (MQ=18)
   aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGGTAAGAcgc                                                                                                                                      >  1:420498/1‑149 (MQ=255)
      gCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATGCGAcgcttg                                                                                                                                   >  2:98149/1‑146 (MQ=255)
         ttATCCGCCCTACATTTGCAATCCTCCTGGCCGGATAAAACGCGACAAGCGTTGCATCCGGCGACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGACATCCCGTAGGTCGCATAAGACGCGACacg                                                                                                                                >  2:526454/1‑147 (MQ=17)
                              tcctccAAGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCAc                                                                                                           <  1:287259/149‑1 (MQ=255)
                                 tcctGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGt                                                                                                                             <  1:186275/128‑1 (MQ=255)
                                 tcctGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGt                                                                                                                             >  2:186275/1‑128 (MQ=255)
                                   ctGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCgggc                                                                                                      >  1:178519/1‑149 (MQ=255)
                                      gCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGGTAAGACGCGCCAAACGTCGCCTCCGGCATCTTCACcgccgccc                                                                                                   >  1:45431/1‑144 (MQ=18)
                                                     gCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGt                                                                                    >  1:217120/1‑149 (MQ=255)
                                                      cAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTg                                                                                   >  1:306059/1‑149 (MQ=255)
                                                       aaGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCCCTGCCGGATGCGGCCTgg                                                                                  >  2:235494/1‑149 (MQ=255)
                                                           gTTGCCTCCGGCAACTGCACCCCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGc                                                                              <  1:413024/149‑1 (MQ=255)
                                                                          tGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACa                                                               >  1:197884/1‑149 (MQ=255)
                                                                              ccGCGCCACTGGGTGATGGGGCGGGAACGCCTCATGCGCTTTACATGTGGGTTCGCGTAGGTTGGATAAGTCGCGTCCAGGGTCGCATCCTTCATCTCCACCGCGCCACGGGCGGATGCGGCGTCGACGCCTTATCCGCCCTACAtttg                                                           <  2:139691/149‑1 (MQ=12)
                                                                              ccGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACAtgtg                                                           <  1:177529/149‑1 (MQ=255)
                                                                              ccGCGCCACTGGCGCATGCGCCATGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACAtgtg                                                           <  1:462039/149‑1 (MQ=255)
                                                                               cgcgCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGc                                                          >  2:532098/1‑149 (MQ=255)
                                                                                gcgcCACTGGCGGATGCGGCGTGAACGCCTTATCAGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCATTATCCGCCCTACATTTGCa                                                         >  2:434291/1‑149 (MQ=255)
                                                                                            gATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCATTTCCGTAACCt                                             >  1:456158/1‑149 (MQ=255)
                                                                                                     tGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAAc                                    >  1:144093/1‑149 (MQ=255)
                                                                                                      gAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAAcg                                   <  1:532098/149‑1 (MQ=255)
                                                                                                       aaCGCCTTATCCGCCCTACAGGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCACATCCTGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAAcgc                                  <  1:267007/149‑1 (MQ=255)
                                                                                                                 ccGCCCTACCTGTGTGTTTCCGTAGGTCGGATAAAACGCCACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTc                        <  2:86852/149‑1 (MQ=255)
                                                                                                                  cGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCCTCCGGCCTCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACCAGTCCAATTCCGTAACCTGGATAACACGCGCCAACCGTCg                       >  2:380219/1‑149 (MQ=18)
                                                                                                                      cTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCCGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATc                   >  2:249471/1‑149 (MQ=255)
                                                                                                                       tACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                  <  1:344626/149‑1 (MQ=255)
                                                                                                                        aCATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCg                 >  2:299994/1‑149 (MQ=255)
                                                                                                                                       tAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACGTGTCCACTTGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGc  <  2:196667/149‑1 (MQ=21)
                                                                                                                                                |                                                                                                                                           
GTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGCAATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGC  >  NC_000913_3_pae_tpiA/3231264‑3231547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.