New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 12931273 (0.080)48 (1.230) 40/284 0.1 94.1% intergenic (‑205/‑400) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913_3_pae_tpiA = 2290113 NA (NA)intergenic (‑32/+1) insH1/yejO IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system

AATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATT  >  NC_000913_3_pae_tpiA/1292979‑1293275
                                                                                                                                                    |                                                                                                                                                    
aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttccgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTaa                                                                                                                                                      <  2:605193‑M1/4‑1 (MQ=255)
  ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTaaaa                                                                                                                                                    >  1:44168‑M1/144‑149 (MQ=255)
            cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGTCGCGAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaa                                                                                                                                          <  2:665174‑M1/149‑13 (MQ=255)
             aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCCCAGCACGTGAGGTTAAggcaggtgcgaac                                                                                                                                         >  2:464459‑M1/1‑136 (MQ=255)
             aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAATTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaac                                                                                                                                         >  2:637768‑M1/1‑136 (MQ=255)
                   cAGGAATGTAAGGAACTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGACAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtcc                                                                                                                                   >  2:568511‑M1/1‑130 (MQ=255)
                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtg                                                                                                                                              >  1:618700‑M1/1‑129 (MQ=255)
                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtg                                                                                                                                              <  2:618700‑M1/137‑9 (MQ=255)
                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAGTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccc                                                                                                                                  >  1:648221‑M1/1‑129 (MQ=255)
                          aagaaagcgtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTa                                                                                                                            >  2:403608‑M1/120‑149 (MQ=255)
                            aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatga                                                                                                                          >  1:84592‑M1/1‑121 (MQ=255)
                             aaacggttcaaataggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgaccgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATgg                                                                                                                         >  1:567060‑M1/117‑149 (MQ=255)
                             aGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgag                                                                                                                         >  2:402188‑M1/1‑120 (MQ=255)
                              aacggtctaaataggctgattcaaggcatttacggtagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATggg                                                                                                                        >  1:538519‑M1/116‑149 (MQ=255)
                               acggtctaaataggctgattcacggcctttaccggagaaaaaatcggctcaaacatgacgaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCCTGTCCCATCTTATgggg                                                                                                                       <  2:499036‑M1/35‑1 (MQ=255)
                                  gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGgaga                                                                                                                    <  2:372974‑M1/38‑1 (MQ=255)
                                   tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGTGGAGAt                                                                                                                   <  2:22034‑M1/39‑1 (MQ=255)
                                   tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGAt                                                                                                                   <  2:21231‑M1/39‑1 (MQ=255)
                                        ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAATTCTTCCTGATTCATGTCACATTTTATGGGGAGATTATCg                                                                                                              >  2:497003‑M1/106‑149 (MQ=255)
                                          tGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca                                                                                                            >  1:224156‑M1/1‑107 (MQ=255)
                                           gggtaattcaaggtatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAg                                                                                                           >  2:31828‑M1/103‑149 (MQ=255)
                                              tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGCGGTTATTGTGGGCt                                                                                                        <  1:535831‑M1/50‑1 (MQ=255)
                                              tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTTTCGTAGGCt                                                                                                        <  2:15363‑M1/50‑1 (MQ=255)
                                              cTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                        <  1:384737‑M1/149‑47 (MQ=255)
                                              cTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAGTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgaaatcatgtttgtcatctg                                                                                                        >  2:570731‑M1/1‑103 (MQ=255)
                                               tttATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                       >  1:259684‑M1/1‑102 (MQ=255)
                                                  aTTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                                                                                    <  1:484369‑M1/149‑51 (MQ=255)
                                                    aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattaccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTcacgac                                                                                                  <  1:57799‑M1/56‑1 (MQ=255)
                                                        catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGGGATTATCGTAGGCTGACGACCttt                                                                                              <  2:301593‑M1/60‑1 (MQ=255)
                                                        catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCGGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCttt                                                                                              >  1:207938‑M1/90‑149 (MQ=255)
                                                         atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTc                                                                                             >  1:21231‑M1/89‑149 (MQ=255)
                                                            gccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACAGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatattagatcatgtttgtaatctggagccatagcacag                                                                                          >  2:157314‑M1/1‑89 (MQ=255)
                                                             ccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                         >  1:105386‑M1/1‑88 (MQ=255)
                                                             ccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                         <  1:262200‑M1/149‑62 (MQ=255)
                                                               gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtctt                                                                                       >  1:372974‑M1/83‑149 (MQ=255)
                                                                  aaataTCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca                                                                                    >  1:272484‑M1/1‑83 (MQ=255)
                                                                   gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGt                                                                                   <  1:607296‑M1/71‑1 (MQ=255)
                                                                     tatCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcctca                                                                                 >  1:218474‑M1/1‑80 (MQ=255)
                                                                      atCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                                >  1:545056‑M1/1‑79 (MQ=255)
                                                                      atCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                                <  1:637768‑M1/149‑71 (MQ=255)
                                                                        cgttgcataaaATTAGCCAGAAAGGACGCGGCATATTGCCCTATTCACACCGATGATTTCGTAGCAAGTGAGGTTAAggcaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                              <  2:32505‑M1/144‑73 (MQ=255)
                                                                        cTTTTTCTAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagtgttcatcatga                                                                              <  1:437508‑M1/149‑73 (MQ=255)
                                                                        cTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                              <  2:272484‑M1/149‑73 (MQ=255)
                                                                        cTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                              <  2:545056‑M1/149‑73 (MQ=255)
                                                                        cTTATCAAAAAATTAACCAGAAAAGACGCCTCAGATAGCCCTATTTACCCCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                              <  2:146004‑M1/149‑73 (MQ=255)
                                                                         ttttCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                          >  1:564529‑M1/1‑76 (MQ=255)
                                                                         ttttCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                          <  2:564529‑M1/120‑45 (MQ=255)
                                                                          tttCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt                                                                            <  1:283243‑M1/149‑75 (MQ=255)
                                                                            ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTtgt                                                                          >  1:74101‑M1/70‑149 (MQ=255)
                                                                            ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcgtattcgtaccttccTTAAAACTTCCTGATTCATGTCCCATTTTAAGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGttgg                                                                          >  2:526777‑M1/70‑148 (MQ=255)
                                                                               tAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgata                                                                                                                             <  2:18184‑M1/95‑26 (MQ=255)
                                                                               tAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgata                                                                                                                             >  1:18184‑M1/1‑70 (MQ=255)
                                                                               gcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGtt                                                                       >  2:689790‑M1/67‑149 (MQ=255)
                                                                                aaaaTTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                                      <  1:402188‑M1/149‑81 (MQ=255)
                                                                                    ttAGCGAGAAAAGACGCGGCATATAGCCCTATTTACCCCGATGAGTTCGCAAACCGAACGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta                                                                  <  1:161052‑M1/149‑85 (MQ=255)
                                                                                    catgaagaaatgaaatgactgagtcagccgagaagtatttccgcgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACga                                                                  >  2:493814‑M1/62‑149 (MQ=255)
                                                                                     atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtct                                                                                        >  2:44146‑M1/61‑126 (MQ=255)
                                                                                     atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGtct                                                                                        <  1:44146‑M1/66‑1 (MQ=255)
                                                                                     atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTACGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACgag                                                                 <  2:395256‑M1/89‑1 (MQ=255)
                                                                                       gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGaa                                                               <  2:476444‑M1/91‑1 (MQ=255)
                                                                                        aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAAt                                                              <  1:234071‑M1/92‑1 (MQ=255)
                                                                                           aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTcc                                                           >  1:480973‑M1/55‑149 (MQ=255)
                                                                                                aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTAtt                                                      <  1:656645‑M1/100‑1 (MQ=255)
                                                                                                aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTAtt                                                      <  1:559725‑M1/100‑1 (MQ=255)
                                                                                                aaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccTTAATACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTAtt                                                      >  2:620691‑M1/50‑149 (MQ=255)
                                                                                                     actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCg                                                 <  1:113863‑M1/105‑1 (MQ=255)
                                                                                                     actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTCTATGTATAGACTATCGTAGGCTTACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCg                                                 >  2:596984‑M1/45‑149 (MQ=255)
                                                                                                          ataGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                            >  1:544185‑M1/1‑43 (MQ=255)
                                                                                                             gCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                          >  2:186878‑M1/1‑40 (MQ=255)
                                                                                                             gCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                          <  1:186878‑M1/148‑109 (MQ=255)
                                                                                                              cccTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggaaccatagaacagggttcatcatgagtcatcaacttaccttcaccgacagtgaattcagcagt                                        >  2:676132‑M1/1‑39 (MQ=255)
                                                                                                               ccgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaa                                       <  2:593476‑M1/115‑1 (MQ=255)
                                                                                                                cgagaagaatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGaaaa                                      <  2:433074‑M1/116‑1 (MQ=255)
                                                                                                                cTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaanttaccttcgccgaaagtgaattcngcagtaa                                      >  2:218439‑M1/1‑37 (MQ=255)
                                                                                                                  aTTTACACCGATGATTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                    <  1:483432‑M1/149‑115 (MQ=255)
                                                                                                                   gaagaagttccccgcttattcgcaccttccTTAACACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGGCGACCTTTCAGTCTGCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTa                                   >  1:140015‑M1/31‑149 (MQ=255)
                                                                                                                      gaatttccccgcttattcgcaccttccTTAAAACTCCCAGATTCATGTAACATTTTATGGGGAGGTGATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGaa                                >  1:201541‑M1/28‑149 (MQ=255)
                                                                                                                      gaatttccccgcttattcgcaacgtccTTAAACCTTCCTGATTCATGTCAAATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGaa                                >  2:595813‑M1/28‑149 (MQ=255)
                                                                                                                      gaattcccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGaa                                >  2:45268‑M1/28‑149 (MQ=255)
                                                                                                                       aatttccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAAc                               >  1:295626‑M1/27‑149 (MQ=255)
                                                                                                                         tttcgccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGGCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAg                             >  1:297885‑M1/25‑149 (MQ=255)
                                                                                                                           tccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac                                                                                                  <  2:151895‑M1/56‑1 (MQ=255)
                                                                                                                           tccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac                                                                                                  >  1:151895‑M1/23‑78 (MQ=255)
                                                                                                                           tccccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTc                           <  2:516446‑M1/127‑1 (MQ=255)
                                                                                                                           gatgatTTCGCAGCACGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                           >  1:543580‑M1/1‑26 (MQ=255)
                                                                                                                              ccgcttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCa                        <  1:687415‑M1/130‑1 (MQ=255)
                                                                                                                                  ttattcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATaa                    >  2:269032‑M1/16‑149 (MQ=255)
                                                                                                                                  tcccagcccggGAGGTTCAggaaggtgcgaacaagtccctgatatgatatcatgtttgtcatctggagccatagaacagggtgcatcatgaggcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa                    <  1:218439‑M1/146‑131 (MQ=255)
                                                                                                                                    gcagcaCGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc                                  <  2:96594‑M1/133‑117 (MQ=255)
                                                                                                                                    gcagcaCGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc                                  >  1:96594‑M1/1‑17 (MQ=255)
                                                                                                                                     cagcaCGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgtcagtgaattcagcagtaagcgccgtcagaccagaaaaga                 <  1:26307‑M1/149‑134 (MQ=255)
                                                                                                                                     cagcaCGTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga                 >  1:621234‑M1/1‑16 (MQ=255)
                                                                                                                                      tcgcaccttccTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGc                >  1:433074‑M1/12‑149 (MQ=255)
                                                                                                                                           gTGAGGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagcgatttt           >  1:500990‑M1/1‑10 (MQ=255)
                                                                                                                                                 ttAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAaga                  <  2:552479/136‑1 (MQ=255)
                                                                                                                                                 ttAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAaga                  >  1:552479/1‑136 (MQ=255)
                                                                                                                                                 ttAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTGGt     >  1:494144/1‑149 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc    >  1:316190‑M1/1‑3 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg  >  1:662074‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATT  >  NC_000913_3_pae_tpiA/1292979‑1293275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.