New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1207790 =5 (0.130)44 (1.270) 36/252 0.1 82.7% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_tpiA 1209619 = 14 (0.400)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_tpiA/1209473‑1209767
                                                                                                                                                  |                                                                                                                                                    
agaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataacaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtttttctcctcctcccaaaccaaCGt                                                                                                                                                    >  2:387266‑M2/147‑149 (MQ=255)
   ggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa                                                                                                                                                 >  1:115201‑M2/144‑149 (MQ=255)
      agatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa                                                                                                                                              <  1:690227‑M2/9‑1 (MQ=255)
             tttgcggcattccacccccacttaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa                                                                                                                                       <  2:639991‑M2/16‑1 (MQ=255)
             tttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa                                                                                                                                       <  1:324877‑M2/16‑1 (MQ=255)
             tttgccgcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa                                                                                                                                       <  1:645182‑M2/16‑1 (MQ=255)
                gcggcattccaccccaactgagtgattactgattgctcaataccacccatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa                                                                                                                                    <  1:462260‑M2/19‑1 (MQ=255)
                 cggctttgcacccccactgaatgattactgattgcacaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa                                                                                                                                   >  2:605943‑M2/130‑149 (MQ=255)
                       tccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa                                                                                                                             <  1:536645‑M2/26‑1 (MQ=255)
                       tccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa                                                                                                                             <  2:115201‑M2/26‑1 (MQ=255)
                         cacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                           >  1:367296‑M2/122‑149 (MQ=255)
                           cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa                                                                                                                         >  1:211616/1‑149 (MQ=255)
                            ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                                        >  1:633060‑M2/119‑149 (MQ=255)
                               ctctgaatgattactgattgctcaatactaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg                                                                                                                     <  2:104415‑M2/34‑1 (MQ=255)
                                  tgaatgattactgattgctcaataccacaaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgatgcattgagttttgctccttctaccaaaccaaCGTTTATGAAAATGAAGAAATAAAACGCAaatggact                                                                                                                  >  2:538957‑M2/113‑146 (MQ=255)
                                    aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                                                <  1:29093‑M2/39‑1 (MQ=255)
                                       gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                             <  1:588793‑M2/42‑1 (MQ=255)
                                           gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGATTCTGAAACAGGAGAAATAACAAGCAAATGGCATCATACCTGc                                                                                                         >  1:1448/1‑149 (MQ=255)
                                           actgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                         >  2:593743‑M2/104‑149 (MQ=255)
                                             gaagggtgcagcaTTGCATTTCGGCCGGCCGGTTGGCGGAGTTGCTGTAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                                                                       <  2:510924/142‑1 (MQ=255)
                                                ttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                                                                    <  1:139086‑M2/51‑1 (MQ=255)
                                                 tgctcaagaccaccaatcataaccggtataggtatgaaaccggtgcgtcgtaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc                                                                                                   <  2:318263‑M2/52‑1 (MQ=255)
                                                   ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                                                 <  1:85951/149‑1 (MQ=255)
                                                    tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtcgccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAACAg                                                                                                >  1:455629‑M2/95‑149 (MQ=255)
                                                    tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTATATCAg                                                                                                >  2:545704‑M2/95‑149 (MQ=255)
                                                       ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                             <  1:299039/149‑1 (MQ=255)
                                                           caccaatcataaccggtatagctctgaaaccggtgcgtcctaatgtagccgttgctgcaatgagtttttctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTTTACCAGGGGGAtt                                                                                         >  2:89599‑M2/88‑149 (MQ=255)
                                                             ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTCCTtttaccagggagcgtcg                                                                                       >  2:172331‑M2/86‑142 (MQ=255)
                                                              caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                                                      >  2:282045‑M2/85‑149 (MQ=255)
                                                               tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                                     >  2:120773/1‑149 (MQ=255)
                                                                ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                    <  2:499889/149‑1 (MQ=255)
                                                                 tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                                                                   <  1:282045‑M2/68‑1 (MQ=255)
                                                                        gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                            >  1:394448/1‑149 (MQ=255)
                                                                        cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                            <  1:443331‑M2/75‑1 (MQ=255)
                                                                          gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTTCTGCCTTTACCAGGGGGATTTAACATGCTTATTgg                                                                          <  2:498726‑M2/77‑1 (MQ=255)
                                                                                  atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                                  >  1:633502‑M2/65‑149 (MQ=255)
                                                                                      tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                              <  2:687968/149‑1 (MQ=255)
                                                                                        gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGGATTTAACATTCTTATTGGCTATGTACGCGTAt                                                            <  1:349112/149‑1 (MQ=255)
                                                                                            tgcgtcgtaaggtggccgttgctgcatggagtttttctacttgtcccaaaccatCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                        <  2:470155‑M2/95‑1 (MQ=255)
                                                                                              cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATTTAACATGCTTATTGGCTATGACCGCGTATcaacaa                                                      >  2:65610‑M2/53‑149 (MQ=255)
                                                                                               gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                     <  2:367296‑M2/98‑1 (MQ=255)
                                                                                                tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                                    <  1:96292‑M2/99‑1 (MQ=255)
                                                                                                tcctaatgtagccgttgctgcatcgagttttgctccttctcgcaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCAATGTACGCgtatcgaccatt                                                    >  2:302841‑M2/51‑145 (MQ=255)
                                                                                                 cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                                                   >  2:323021/1‑149 (MQ=255)
                                                                                                  ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                                  >  1:441493‑M2/49‑149 (MQ=255)
                                                                                                    ggAACCGGGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                                                <  1:375721/149‑1 (MQ=255)
                                                                                                     gAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                                               <  2:37740/149‑1 (MQ=255)
                                                                                                               tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                                     <  1:34631‑M2/114‑1 (MQ=255)
                                                                                                               tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                                     <  1:109229‑M2/114‑1 (MQ=255)
                                                                                                                gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc                                    <  1:293853‑M2/115‑1 (MQ=255)
                                                                                                                cctgcattgagttttgctccttcacccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc                                    <  2:35853‑M2/115‑1 (MQ=255)
                                                                                                                  tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                                  >  1:207377‑M2/33‑149 (MQ=255)
                                                                                                                  tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAACCACAGATCTa                                  >  2:504332‑M2/33‑149 (MQ=255)
                                                                                                                   gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc                                 >  2:125239‑M2/32‑149 (MQ=255)
                                                                                                                   gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATAACCAGAACACAGATCTAc                                 >  2:125149‑M2/32‑149 (MQ=255)
                                                                                                                         acttttgctccttcttccaaaccaaCGTTTATGGAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACCCAGATCTACAACGTa                           <  2:168820‑M2/124‑1 (MQ=255)
                                                                                                                             cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc                       >  1:81773/1‑149 (MQ=255)
                                                                                                                                ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt                    >  1:28620‑M2/19‑149 (MQ=255)
                                                                                                                                    ttCTCCCCAACCAACGTATATGAAAATGAAGAAATAACAAGCAACTGACATCATTACTGCTTATAACAGAGGGATTTAACATGCTAATTGGCTATCTACGCGTATCAAGAAATGACCAGAAACCACATCCACAACATACTGCTCAGAAc                >  2:140533/1‑149 (MQ=255)
                                                                                                                                        cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCATAGCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg            <  2:455629‑M2/139‑1 (MQ=255)
                                                                                                                                         ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc           >  1:48944‑M2/10‑149 (MQ=255)
                                                                                                                                          caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa          <  2:633502‑M2/141‑1 (MQ=255)
                                                                                                                                          caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGACCAGAACACAGATCTACAACGTAATACGCTGAactgtgag          >  1:349089‑M2/9‑147 (MQ=255)
                                                                                                                                           aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCGTATTGGCTATGTACGCTTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg         >  2:595851‑M2/8‑149 (MQ=255)
                                                                                                                                                aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc    <  1:172331‑M2/147‑1 (MQ=255)
                                                                                                                                                  cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCgc  <  2:274593/149‑2 (MQ=255)
                                                                                                                                                  cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  1:593743/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
ATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_tpiA/1209473‑1209767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.