New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2430968	NA (NA)	6 (0.170) +GTTCACTGTAG	6/262	4.2	15.3%	noncoding (40/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	= 2662483	36 (0.920)					noncoding (175/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAA  >  NC_000913_3_pae_tpiA/2662336‑2662629                                                                                                                                                    |                                                                                                                                                   gCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCa                                                                                                                                                   >  1:343312/1‑149 (MQ=38)    cTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTCCGCGTCGCATCAGGAAACGGCTGTCGGATGGGGCGTGAACGTCTTATCCGACCTACGGTTCTGTTCACTCTAGGCCTGATAAGCCGCATCACTCGTCGCAGCAAGCAACg                                                                                                                                                >  2:476177/1‑149 (MQ=11)     tGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg                                                                                                                                               >  1:463383/1‑149 (MQ=35)       gggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                                                             <  1:104398/149‑1 (MQ=32)          ttCTGTACACTTTAGGCCTGATAGGACGCATTACGCGGCGCATCAGGCAACTGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc                                                                                                                                          <  2:134263/149‑1 (MQ=255)                         gCCTGAAAAGACGCATTACGTGTGGGAGCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc                                                                                                                           <  2:102394/149‑1 (MQ=14)                                 gcgcgcgTTGCGCGGCGCATGAGGGAACGGCTGGCGGATGCTGCGTGGACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATc                                                                                                                   <  2:29924/146‑1 (MQ=17)                                        ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTAACTGTAGGCCTGATAAGACGCATTATGTGCGCCACCAGGTAACGGCTGTTGGCTGCGGCGTGTACCCCTTATCCGACCTa                                                                                                            >  1:506756/1‑149 (MQ=14)                                             cggcGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGtt                                                                                                       <  1:653355/146‑1 (MQ=255)                                                 gcagtaGGTAACGGCTGTCGGATGCGGCGTGAACGCCTAATCAGCCCTGCGGTAGGGTCAACTGTAGGCCTGATAAGACGCAGTACTCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGt                                                                                                   <  2:494320/144‑1 (MQ=11)                                                   aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTc                                                                                                 >  1:85964/1‑149 (MQ=255)                                                        gCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGt                                                                                            >  1:80555/1‑149 (MQ=255)                                                                tGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGTACCCCTTATCCGACCTACGGTTCAGTCCACGGTAGCGCTGa                                                                                    >  2:239987/1‑149 (MQ=14)                                                                tGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGGGAACGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGccgca                                                                                    >  1:239959/1‑146 (MQ=255)                                                                     gATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa                                                                               >  2:551284/1‑149 (MQ=255)                                                                            cgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTCCGGTTTTGGTCGCTGTAAGCCCGATAAGACGCAttt                                                                        >  2:36628/1‑148 (MQ=14)                                                                                     cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAGAAGACGCATTACGCGTCGCa                                                               >  1:248396/1‑149 (MQ=255)                                                                                             gccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCaa                                                       <  2:588628/148‑1 (MQ=25)                                                                                                  gggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                  <  2:501687/148‑1 (MQ=14)                                                                                                   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGCATACGGCGGTTGGACGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACCGTAAGCCTGATAAGAACCATTACGCGCCGCCTCCGGCAACGGccg                                                 >  2:290533/1‑147 (MQ=11)                                                                                                     ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGGCGCATCAGGCACCGGCTGtt                                               >  1:640237/1‑149 (MQ=18)                                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa                                                                               <  1:644262/114‑1 (MQ=33)                                                                                                        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa                                                                               >  2:644262/1‑114 (MQ=32)                                                                                                         gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                           <  2:400845/149‑1 (MQ=35)                                                                                                          tacACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                          <  2:656507/147‑1 (MQ=17)                                                                                                             aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTGGGATGCGGCGTGAACGGCTTATCTGACCTACGGTTCTGTTCACTGTAGGCCTCATGAGACGCAATGCGCGTCGCTTCAGGCAACGGCCGGTATTCGGcc                                       >  2:443918/1‑149 (MQ=11)                                                                                                                    gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                >  1:66500/1‑149 (MQ=255)                                                                                                                     ccTGATAAGACGCATTGCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                               >  1:39639/1‑149 (MQ=255)                                                                                                                           aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt                         <  2:414297/149‑1 (MQ=255)                                                                                                                                   ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCATGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                 >  1:692292/1‑149 (MQ=255)                                                                                                                                           cGCCTCAGGCAACGGCTGTCGTATGCGGCGTGAACGCCTTCTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCTCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa         <  2:506756/149‑1 (MQ=255)                                                                                                                                           cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa         <  2:66500/149‑1 (MQ=255)                                                                                                                                           cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa         <  1:551284/149‑1 (MQ=255)                                                                                                                                               tCAGGCAACGGCTGGCGGATGCGGCGTGAACGCCTTATCCGACTTACGGTTCTGTTCACTGTAGGCCTTATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa     <  1:252823/149‑1 (MQ=255)                                                                                                                                                cAGGCAACGGCTGTCGGATGCGGCGTGAACGCGTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg    <  2:654766/149‑1 (MQ=255)                                                                                                                                                  ggCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa  >  2:562945/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAA  >  NC_000913_3_pae_tpiA/2662336‑2662629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.