New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2430968	NA (NA)	6 (0.170) +GTTCACTGTAG	6/262	4.2	NA	noncoding (40/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	= 2662574	NA (NA)					noncoding (266/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTT  >  NC_000913_3_pae_tpiA/2662428‑2662718                                                                                                                                                   |                                                                                                                                                 gccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCaa                                                                                                                                                <  2:588628/148‑1 (MQ=25)      gggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt                                                                                                                                           <  2:501687/148‑1 (MQ=14)       ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGCATACGGCGGTTGGACGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACCGTAAGCCTGATAAGAACCATTACGCGCCGCCTCCGGCAACGGccg                                                                                                                                          >  2:290533/1‑147 (MQ=11)         ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGGCGCATCAGGCACCGGCTGtt                                                                                                                                        >  1:640237/1‑149 (MQ=18)             gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc                                                                                                                                    <  2:400845/149‑1 (MQ=35)              tacACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg                                                                                                                                   <  2:656507/147‑1 (MQ=17)                 aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTGGGATGCGGCGTGAACGGCTTATCTGACCTACGGTTCTGTTCACTGTAGGCCTCATGAGACGCAATGCGCGTCGCTTCAGGCAACGGCCGGTATTCGGcc                                                                                                                                >  2:443918/1‑149 (MQ=11)                        gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc                                                                                                                         >  1:66500/1‑149 (MQ=255)                         ccTGATAAGACGCATTGCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAcc                                                                                                                        >  1:39639/1‑149 (MQ=255)                               aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt                                                                                                                  <  2:414297/149‑1 (MQ=255)                                       ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCATGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct                                                                                                          >  1:692292/1‑149 (MQ=255)                                               cGCCTCAGGCAACGGCTGTCGTATGCGGCGTGAACGCCTTCTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCTCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                                                                  <  2:506756/149‑1 (MQ=255)                                               cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                                                                  <  2:66500/149‑1 (MQ=255)                                               cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa                                                                                                  <  1:551284/149‑1 (MQ=255)                                                   tCAGGCAACGGCTGGCGGATGCGGCGTGAACGCCTTATCCGACTTACGGTTCTGTTCACTGTAGGCCTTATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa                                                                                              <  1:252823/149‑1 (MQ=255)                                                    cAGGCAACGGCTGTCGGATGCGGCGTGAACGCGTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAg                                                                                             <  2:654766/149‑1 (MQ=255)                                                      ggCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGaa                                                                                           >  2:562945/1‑149 (MQ=255)                                                                     ataaggcgTTCACGCCGCATCCGACCCACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTTTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGgtat                                                                            >  1:347648/5‑149 (MQ=21)                                                                         ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa                                                                        <  2:162265/149‑1 (MQ=255)                                                                                 cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGc                                                                >  1:451699/1‑149 (MQ=255)                                                                                     ttAGCCGGCCTACGGTTCTGTTCACTGAAGGCGTGATAAGAGGCATTACGCGTCGCATCAGGCAACGGCGGTTATTCGGCCTTGATACCTTTATTCTGCTACTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTTCTGACTTTc                                                            >  2:358677/1‑149 (MQ=25)                                                                                      tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTcc                                                           <  1:470161/149‑1 (MQ=255)                                                                                       aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCg                                                          <  2:343312/149‑1 (MQ=255)                                                                                             ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATAAGACAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCAAGAATACCCCTCAGGGTATTCATCTCCTGGCTTTCGGGgccgg                                                    >  2:215116/1‑146 (MQ=25)                                                                                              cTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGATGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcgcgc                                                   >  1:670725/1‑149 (MQ=255)                                                                                                   gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGGTGTTATTCGGCCTTGTTACCTTTATTCTACTTCTCCATAGAAGCCATACTCCGGCCCAGGGTCTTCAAACCCTAGCTTTCCGGCCCAGCACggg                                              >  2:265156/1‑149 (MQ=21)                                                                                                        cagaaccgTAGGTCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAAc                                         <  2:311640/142‑1 (MQ=255)                                                                                                         ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACa                                        >  1:350687/1‑149 (MQ=255)                                                                                                            aCTGTAGGCCTGATAAGACGCATTACGCGTCGCGTCAGGCAACGGCTGGTATTCGGCCTTGTTACCTTTATTCTGCTGCCCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAgcc                                     >  2:341732/1‑147 (MQ=255)                                                                                                            aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGAc                                     >  2:519080/1‑149 (MQ=255)                                                                                                             cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACg                                    <  2:440830/149‑1 (MQ=255)                                                                                                             cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACg                                    <  2:350687/149‑1 (MQ=255)                                                                                                               ttAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCCGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgc                                  <  1:210153/148‑1 (MQ=255)                                                                                                                     cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAtt                            >  1:225295/1‑149 (MQ=255)                                                                                                                      tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGAGCAAttt                           >  1:124272/1‑149 (MQ=255)                                                                                                                       gATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTAGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTa                          >  1:545844/1‑149 (MQ=255)                                                                                                                          aaGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtc                       <  1:585213/149‑1 (MQ=255)                                                                                                                           aGACGAATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtca                      >  1:395434/1‑149 (MQ=255)                                                                                                                            gatgctttACGCGTCGCTTCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTGAATAGAAGCCAGAAGCCCGCGCAGGAGATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATtcat                     <  2:506516/143‑1 (MQ=255)                                                                                                                                  ttACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCCCCtt               >  2:330179/1‑148 (MQ=255)                                                                                                                                  ttACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTg               <  1:36628/149‑1 (MQ=255)                                                                                                                                         tCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGa        <  2:85964/149‑1 (MQ=255)                                                                                                                                              tgaGGCAACGGCTGTTATTCGACCTTGTTACCTTTATTCGGCCGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGtt   <  2:347648/147‑1 (MQ=255)                                                                                                                                               cAGGCAACGTCTGTTATTCGGCTTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGACTCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt  <  1:543575/149‑1 (MQ=255)                                                                                                                                               cAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGttt  <  1:223136/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 ACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTT  >  NC_000913_3_pae_tpiA/2662428‑2662718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.