| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1952909 = | 23 (0.790) | 5 (0.180) | 5/268 | 3.2 | 18.9% | coding (208/744 nt) | cmoA | carboxy‑SAM synthase |
| ? | NC_000913_3_pae_tpiA | 1952930 = | 21 (0.760) | coding (229/744 nt) | cmoA | carboxy‑SAM synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAATATCACCTTCAATGACGTCTACTGGCGTAGGGGCTTTATAGGCGTCAATATGACGACGGCAGCGTTCAATCATCGCCGGGGAGTTGTCGATGGCAATAATTTTGCAATTATCATGATGAATGTTGCGACGCACCGAGAGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1953056‑1952909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAA > NC_000913_3_pae_tpiA/1952930‑1953075 GAATATCACCTTCAATGACGTCTACTGGCGTCGGGGCTTTATAGGCGTCAATATGACGACGGCAGCGTTCAATCATCGCCGGGGAGTTGTCGATGGCAATAATTTTGCAATTATCATGATGAATGTTGCGCCGCACCCAGAGCGTCcac > 1:236662/1‑146 AATTATCATGATGAATGTTGCGACGCACCGAGAGCGTCGCCACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACG > 2:355124/1‑149 TCATGATGAATGTTGCGACGCACCGAGAGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTC > 1:377615/1‑79 TCATGATGAATGTTGCGACGCACCGAGAGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTC < 2:377615/79‑1 TTGCGACGCACCGAGAGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAAC < 1:461125/84‑1 TTGCGACGCACCGAGAGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAAC > 2:461125/1‑84 CGCAACAATCATCATGATAATTGCAAAATTATTGCCGTCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCTGTAGGCGGCATGGAAGGTGATGTTCGCGATATCGCCATTGAAAA < 2:474466/149‑1 GAATATCACCTTCAATGACGTCTACTGGCGTAGGGGCTTTATAGGCGTCAATATGACGACGGCAGCGTTCAATCATCGCCGGGGAGTTGTCGATGGCAATAATTTTGCAATTATCATGATGAATGTTGCGACGCACCGAGAGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1953056‑1952909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAA > NC_000913_3_pae_tpiA/1952930‑1953075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |