New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 264075	49 (0.810)	6 (0.100) +A	6/282	7.4	10.9%	coding (173/222 nt)	ykfH	uncharacterized protein
	?	NC_000913_3_pae_tpiA	= 264097	50 (0.830)					coding (151/222 nt)	ykfH	uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTCGGTTGCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCGAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCGGTATATCGTCATTG  >  NC_000913_3_pae_tpiA/263927‑264222                                                                                                                                                     |                                                                                                                                                    cAGTCGGTTGCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTATAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCt                                                                                                                                                     <  1:329062/149‑1 (MQ=255)      ggTTGCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTAAAGTTCTCCACTATTCCAGGTATTTGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTggcgg                                                                                                                                                >  1:988653/1‑149 (MQ=255)        ttGCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCCCTATTGACAGTCCACGGAGACGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGgcggcg                                                                                                                                              >  1:30015/1‑149 (MQ=255)          gCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACCGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGtt                                                                                                                                            <  1:353175/149‑1 (MQ=255)            cTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCg                                                                                                                                          >  1:123082/1‑149 (MQ=255)                 tGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGta                                                                                                                                     <  1:343133/149‑1 (MQ=255)                   cACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGACGTTCGGCGtata                                                                                                                                   >  1:106754/1‑149 (MQ=255)                   cACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGAAGCTCAAACCAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGgata                                                                                                                                   >  1:879917/1‑149 (MQ=39)                    aCCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATAc                                                                                                                                  >  1:679453/1‑149 (MQ=255)                     ccAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTCCGGCGTATAcc                                                                                                                                 >  2:359117/1‑149 (MQ=255)                      catgcGGGCTTCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACcg                                                                                                                                <  1:87068/145‑1 (MQ=255)                            ggCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGAGGCTCATCAGGCAGGTATAGGTCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGa                                                                                                                          <  1:172212/149‑1 (MQ=255)                               tCCCCGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCGCTATGGTCAGTTCAGGGTGATGGTCAGCCGGCAGGTATAGGGCCCACTTCGGTCCTCGCGGCGTTCGGCGTATCCCGCTAGGACTc                                                                                                                       >  2:129781/1‑149 (MQ=255)                                  cagactcAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCgg                                                                                                                    >  1:738387/7‑149 (MQ=255)                                  cAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTCTTGTCAGTTCAGGGTGATGGTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCgg                                                                                                                    >  1:295689/1‑149 (MQ=255)                                         aGTGTAATCCCCCGCCGCAGGCCCCTGGTAGGGTTGCTCATTACAGTGCTCCACGATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTAGAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATc                                                                                                             <  1:465076/149‑1 (MQ=255)                                             tAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGa                                                                                                         >  2:132584/1‑149 (MQ=255)                                              aaTCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGaa                                                                                                        <  2:738387/149‑1 (MQ=255)                                               aTCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAAc                                                                                                       >  2:831012/1‑149 (MQ=255)                                                   cccGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATACGGCCCATTGCGGTCCTGGCGGCGTCCGGCGTATACCGCTAGGACTCCGGCGATATCCGGGACGTcc                                                                                                   >  2:732314/1‑149 (MQ=255)                                                             gCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCAGGAACGTCCCTGCCGgtgt                                                                                         >  1:18006/1‑149 (MQ=255)                                                               cccTGGTAGGGTTGCTCATTACAGTTGTCCACTATTGTCAGTTAATGACGGTGGTCAGCATGCAGGTATAAGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGCTCTCAGCACCGTCCCTGCCGGTGTaa                                                                                       >  2:700428/1‑149 (MQ=255)                                                                   ggTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCGGGGTGATGCTCATCAGGCCGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGAc                                                                                   >  1:939594/1‑149 (MQ=255)                                                                          ttGCTCATTACAGTTCTCCACTATTGTCAGTTAAGGGTGATGCACATCAGGCAGGGATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCGTGCCGGAGTAATgacggacgat                                                                            >  1:658657/1‑147 (MQ=255)                                                                            gCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTAc                                                                          >  1:965221/1‑149 (MQ=255)                                                                                aTTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACGGGCGCTACCGTg                                                                      >  1:712236/1‑149 (MQ=255)                                                                                aTTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTg                                                                      >  1:722884/1‑149 (MQ=255)                                                                                  tACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGGAATGACACACGCTACCGTAcc                                                                    >  2:47125/1‑149 (MQ=255)                                                                                    cAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCg                                                                                             >  2:757786/1‑122 (MQ=255)                                                                                    cAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCg                                                                                             <  1:757786/122‑1 (MQ=255)                                                                                        tccccACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGt                                                              <  1:235491/146‑1 (MQ=255)                                                                                          tcCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTAt                                                            >  2:634024/1‑149 (MQ=255)                                                                                             aCTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTGCCGTGCCACTgcgctttg                                                         >  2:106667/1‑142 (MQ=255)                                                                                                aTTGCCAGATAAGGGCGATGCTCAGCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCCAGGACTCCGGCGAGATCCGGAACGTCCCTGCCGGTGTAATTACAGACGCTACCGTGCCACTGGTATTTGCCg                                                      <  2:26366/149‑1 (MQ=21)                                                                                                 ttGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCCCTGGTATTTGCCgg                                                     >  1:525893/1‑149 (MQ=255)                                                                                                        ttCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTa                                              >  2:456901/1‑149 (MQ=255)                                                                                                        ttCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTa                                              >  1:382529/1‑149 (MQ=255)                                                                                                         tCAGGGTGATGCTCAGCAGGCAGGTATAGGCCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTACGACTCCGGCGATACCCGGAACGTCCATGCCAGTTTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAg                                             <  1:354623/149‑1 (MQ=21)                                                                                                            gggTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGa                                          >  1:531351/1‑149 (MQ=255)                                                                                                               tGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGaaac                                       >  2:548233/1‑148 (MQ=255)                                                                                                               tGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTAGTATTTGCACGTGCAGTAGCGACAg                                       >  2:405834/1‑149 (MQ=21)                                                                                                                   gCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACcgctag                                                                                                                            >  1:399382/1‑57 (MQ=255)                                                                                                                   gCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAg                                                                                                                            <  2:399382/60‑1 (MQ=255)                                                                                                                            gcaggTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATGCCGCTAGGACTCCGGCGATATCCGGAACGTGCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTGGCGAAAGATTCGGGACTCAg                          >  2:387994/1‑149 (MQ=255)                                                                                                                            gcaggTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATGTCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAACATTCGGGACTCAg                          >  1:436200/1‑149 (MQ=255)                                                                                                                            gcaggTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAg                          <  1:166077/149‑1 (MQ=255)                                                                                                                                gTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGact                      >  2:789589/1‑147 (MQ=255)                                                                                                                                     gggCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACCCAGGATGCTGGc                 >  1:582452/1‑149 (MQ=255)                                                                                                                                      ggCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCg                <  1:156684/149‑1 (MQ=255)                                                                                                                                       gCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCgg               <  1:831012/149‑1 (MQ=255)                                                                                                                                        ccctgtGCGGTCCCGGCGGCTCTCGGCGTATACCGCTAGGCCTCCGTCGATAGCCGGAACGTCCCTGCCGGTGAAATGACAGACGCAACCGTGCCACTGGTACTTGCCGGTGCAGTAGCGAAAGATTCGGGACGCAGGATGCTGGCGGt              <  2:344435/144‑1 (MQ=17)                                                                                                                                         ccATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCGGta             >  1:835475/1‑149 (MQ=255)                                                                                                                                                 gTCCTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCGGTATATCGTCa     <  1:563743/149‑1 (MQ=255)                                                                                                                                                    cTGGCGGCGTTCGGCGTATACCGCTAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCGGTATATCGTCATTg  <  1:456901/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAGTCGGTTGCCTTCCTGCACCAGACGGGCTCCCAGGCGCAGTGTAATCTCCCGCTGCAGGCCCCTGGTAGGGTTGCTCATTACAGTTCTCCACTATTGTCAGTTCAGGGTGATGCTCATCAGGCAGGTATAGGGCCCATTGCGGTCCTGGCGGCGTTCGGCGTATACCGCGAGGACTCCGGCGATATCCGGAACGTCCCTGCCGGTGTAATGACAGACGCTACCGTGCCACTGGTATTTGCCGGTGCAGTAGCGAAAGATTCGGGACTCAGGATGCTGGCGGTATATCGTCATTG  >  NC_000913_3_pae_tpiA/263927‑264222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.