New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 707781	52 (0.860)	5 (0.090)	5/266	7.6	9.6%	noncoding (12/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	= 707795	46 (0.820)					noncoding (26/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGGTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA  >  NC_000913_3_pae_tpiA/707656‑707935                                                                                                                                            |                                                                                                                                             gAAGGTTACTTCTGGCTCGATAGCCGACATTCTACGGCGGAAACAGCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGTCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGCGACGTAAACGCCCCATCCGGCa                                                                                                                                     <  1:913369/149‑1 (MQ=255)  aaGGTTACTTCTGCCTTGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGGTGGGCTGCGTGAGACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                                                                                    <  1:479377/149‑1 (MQ=255)  aaGGTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                                                                                    <  2:382359/149‑1 (MQ=255)     gTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGCTGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                                                 >  2:241112/1‑149 (MQ=255)     gTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAggc                                                                                                                                 >  2:242597/1‑148 (MQ=255)     gTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTGAAGGTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                                                 >  1:871223/1‑149 (MQ=255)          ttCTGCCTCGATCGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAAGAACAGa                                                                                                                            >  2:915219/1‑149 (MQ=255)          ttCTGCCCCGAGCGCCGCGATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGa                                                                                                                            >  2:915210/1‑149 (MQ=255)             tGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTCGGCTGCGTGATACCTGAGCGGAAGTAGGCGAGTAATTTGAAGTTTCGCTATGCCGGATGGAGAGTTTACGTCCCATCCGGCCAGCAACAGACaa                                                                                                                         >  2:143545/1‑149 (MQ=255)               ccTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGTTGGGGCGTTTACGTCGCATCCGGCAAGGGACAGACAAAc                                                                                                                       >  1:41768/1‑149 (MQ=255)               ccTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAAc                                                                                                                       >  1:990719/1‑149 (MQ=255)                gtCGTTAGCCGCCATTGTACTGCGGAAAACCCGGTATTTAACCTCACCGTTGGGCCCAGCGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTCCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACa                                                                                                                      <  2:337755/148‑1 (MQ=255)                cTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGTGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGGTTACGTCCCATCCAGCAAAGAACAGCCCAACa                                                                                                                      >  2:261161/1‑149 (MQ=255)                    aTAGGCGCCATTCTACGGCGGAAACACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                                                  <  1:868884/149‑1 (MQ=255)                    aTAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                                                  >  1:668268/1‑149 (MQ=255)                    aTAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                                                  <  1:52749/149‑1 (MQ=255)                        ccgccATTCTGCGGCGGAAAACACGGTATTTAACCGCACCGTTGGGCTGCGTGACGCCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCaaa                                                                                                              <  2:958648/149‑1 (MQ=255)                         cgccAGTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTTGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                                                                                             <  1:130810/149‑1 (MQ=255)                          gccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACg                                                                                                            >  2:1047977/1‑149 (MQ=255)                                  aCGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTg                                                                                                    >  1:578198/1‑149 (MQ=255)                                      cggAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCCAGGAACAGACAAACAGTTTCAAACGCTAAATCGCCTg                                                                                                >  2:371515/1‑149 (MQ=255)                                              ccGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTa                                                                                        <  1:240994/149‑1 (MQ=255)                                                 gTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACCGACAAACAGTTTCAAAAGCTAAATTGCCTGATTCGCTACGc                                                                                     >  2:614915/1‑149 (MQ=255)                                                      tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATc                                                                                <  2:366510/149‑1 (MQ=255)                                                       aaCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCa                                                                               <  1:714844/149‑1 (MQ=255)                                                        aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAg                                                                              <  1:388983/149‑1 (MQ=255)                                                           gtttaggtGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTTTGCCGGATGTGGCGTTTACGTCGCATACGGTAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCGTTTTGCGCTACGCTTTTCAGGcc                                                                           >  2:972717/8‑149 (MQ=255)                                                           gCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGGAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAACGAACAGACAAACAGTTTCAAACGCTCAACTGCCTGATGCGCTCCGCTTCTCCGGcc                                                                           >  2:984553/1‑149 (MQ=255)                                                            gaCCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTGAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAGGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCt                                                                          >  2:39579/2‑149 (MQ=255)                                                            cACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCACTACGCGTATCAGGCCt                                                                          >  1:542914/1‑149 (MQ=255)                                                                   gggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATggt                                                                   >  1:41668/1‑147 (MQ=255)                                                                       tGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTCCATGATctct                                                               >  1:232782/1‑149 (MQ=255)                                                                           tGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCaa                                                           <  2:974334/149‑1 (MQ=255)                                                                           tGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCaa                                                           >  2:664895/1‑149 (MQ=255)                                                                                 cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTCCATCATCTCTGACACATAtt                                                     >  2:254372/1‑149 (MQ=38)                                                                                 cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCaa                                                           >  2:299246/1‑143 (MQ=255)                                                                                 cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCaa                                                           <  1:299246/143‑1 (MQ=255)                                                                                  tGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTg                                                    >  1:826196/1‑149 (MQ=255)                                                                                    ggCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAg                                                  <  2:503283/149‑1 (MQ=255)                                                                                           gTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGt                                           >  2:657906/1‑149 (MQ=255)                                                                                                    tAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAGACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATCTATTGAGTTTGCGTGCTTATGTa                                  >  1:889133/1‑149 (MQ=255)                                                                                                    tAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCCCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTa                                  <  1:371515/149‑1 (MQ=255)                                                                                                                   cTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGt                   >  1:533471/1‑149 (MQ=255)                                                                                                                          gcaatgggCGCTTACGCCGCCTCCAGCAAGAAACAGACAAACAGTTTCAAACGACAAATCGCCCTACCCGCTACGCTTACCAGGCCAACATAATCACCACAATATATCGACATCGCGCGCTTTTGCACGCCGGATAAGACCCTCAcgcc            <  2:41768/144‑1 (MQ=255)                                                                                                                                 gCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAatata                                                       <  2:884675/99‑1 (MQ=255)                                                                                                                                 gCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAatata                                                       >  1:884675/1‑99 (MQ=255)                                                                                                                                    tttACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGAGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa  >  1:194103/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                             GAAGGTTACTTCTGCCTCGATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA  >  NC_000913_3_pae_tpiA/707656‑707935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.