| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1338524 | 24 (0.850) | 4 (0.160) | 4/256 | 3.3 | 14.9% | intergenic (+18/+46) | acnA/ribA | aconitate hydratase 1; aconitase A/GTP cyclohydrolase II |
| ? | NC_000913_3_pae_tpiA | = 1338535 | 24 (0.940) | intergenic (+29/+35) | acnA/ribA | aconitate hydratase 1; aconitase A/GTP cyclohydrolase II | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGCTTACGCGCGCGGATGGTAGCCAGGAAGTCGTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGACCTACAATCAATGGTACGCGTTCAACAATA > NC_000913_3_pae_tpiA/1338378‑1338669 | aCGCTTACGCGCGCGGATGGTAGCCAGGAAGTCGTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCGGGtt > 1:33583/1‑149 (MQ=255) tACGGGCGCGGATGGTAGCCAGGAAGTCGTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTAtttt < 2:275137/149‑1 (MQ=255) cAGGAAGTCGTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCAGCAAGCAAAtaa > 2:489800/1‑147 (MQ=255) gTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACaa > 1:281765/1‑149 (MQ=255) gTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAggg < 2:281765/149‑1 (MQ=255) tCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGtt < 1:420718/149‑1 (MQ=255) acacCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAg > 1:138050/1‑149 (MQ=255) ccGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCCTTAGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCaa > 2:107509/1‑149 (MQ=255) ccGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTAGTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCaa > 1:293706/1‑149 (MQ=255) ctactaCAAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCg < 2:341108/149‑1 (MQ=255) tacCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCtt < 2:417455/149‑1 (MQ=255) tacCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCATGCAAGCAAATGAATTGCACAATGCATGAGGTTTGATTGTTCAGAACATGGCCCATATTCTCGGCtt > 2:271119/1‑149 (MQ=255) gAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTa > 2:347885/1‑149 (MQ=255) gacgGCATTTTGCATTATGTGAGTGGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTGCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCga < 2:312814/149‑1 (MQ=255) ggCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGAt > 1:225985/1‑149 (MQ=255) ttCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGCCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGtt > 2:53282/1‑149 (MQ=255) aaGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGACCTAcaatca > 2:265056/1‑149 (MQ=255) aGTAAAAACTCTTTGCTAGCCTGATAGTTTTCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTGCAGCAAATGGCCCATGTTCTCGGCTTTGGTATCGAGATAATGGTCGTTATTGGGGTTACGACCTAcaatcaa < 1:419630/149‑1 (MQ=255) aacTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTc < 1:15153/116‑1 (MQ=255) aacTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTc > 2:15153/1‑116 (MQ=255) tATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGACCTACAATCAATGATAcgcg > 2:383323/1‑149 (MQ=255) ccGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGAGCTACAATCAATGGTACGCGTTCAACAgta > 1:3212/1‑149 (MQ=255) ccGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGACCTACAATCAATGGTACGCGTTCAACAata > 2:288828/1‑149 (MQ=255) gTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTc > 2:240919/1‑100 (MQ=255) gTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTc < 1:240919/100‑1 (MQ=255) | ACGCTTACGCGCGCGGATGGTAGCCAGGAAGTCGTACCCTGCCGTTGTCGTATCGACACCGCGACGGAGTTGACCTACTACCAGAACGACGGCATTTTGCATTATGTCATTCGTAATATGTTGAAGTAACAACTATTTGCTTGCCGGTTATTTTGCTTCCGGCAAGCAAATGAATTACACAATGCAAGAGGGTTATTTGTTCAGCAAATGGCCCATTTTCTCGGCTTTGGTATCGAGATAATGTTCGTTATTGGGGTTACGACCTACAATCAATGGTACGCGTTCAACAATA > NC_000913_3_pae_tpiA/1338378‑1338669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |