| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2549484 = | NA (NA) | 4 (0.150) | 4/268 | 3.4 | NA | noncoding (19/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 3598404 = | NA (NA) | noncoding (8/99 nt) | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCA > NC_000913_3_pae_tpiA/2549339‑2549630 | gTCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCa > 2:328935/1‑149 (MQ=255) ggaagttATGGTTGGGGAGTTGATCAGGGGTATGGGGCGTTAAAGCAGAAGGAATAAAAAGGCCAGTGAGTAATGTTACGGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 2:431167/144‑1 (MQ=37) ttATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcaca > 1:174407/1‑149 (MQ=255) tGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATAtt < 1:425305/149‑1 (MQ=255) gTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGaa > 1:27687/1‑149 (MQ=255) gtgtATGCGGCGTTAAAGCAGACGTACTCAAAAGGCGCGTCCGTAATGTTGCTCCCTTGTCAGAGAGCGCTGTCAATCGTAAAACTTCCTGATACCCTTTTCTTATCAGGCCTACGTGTAGCACACAATATATTGAATTAGCatgttta > 2:227676/1‑143 (MQ=255) gtgtATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAttt > 2:268231/1‑149 (MQ=255) tgtATGCGGCGTTAAAGCAGAAGTAATAATTAGACCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTc > 2:236968/1‑149 (MQ=255) aaaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCTACCGGCATAGGGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCa > 1:14690/1‑149 (MQ=21) gtcagtAAGGTTACGGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTCCACGCCGCATCCGGCgtg < 2:189693/149‑1 (MQ=255) agtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGCTGCGCTACGCTTATCAGGCCTACGTGGAGCCCACACTATATTGAATTAGCACGCTTTCGTAGGCCGGATAAGGCGTTAACGCCGCATACGGAGTGTAc > 1:354237/1‑149 (MQ=21) agtAATATTCCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCAAAATATATTGAATTAGCACACATTCGTAGGGCGAATACGGCGTGCACACCGCATACGGCgttgac > 2:471575/1‑145 (MQ=18) aaTGTTACTGGCTGGTATGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTCGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAc < 1:328935/149‑1 (MQ=255) ctggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCACACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACt > 1:389855/1‑149 (MQ=255) tggTCTGAGATTGCTGACAAACGCAAAACTGCCTGAGGCGCTACGTGTATCAGGCCTACGTTGAGCCCACAATACATTGAATTGGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCAGCCGGCGTGTACAACGCGCACTTGGTc < 1:352830/149‑1 (MQ=21) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaac > 2:147486/1‑149 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaac < 1:236968/149‑1 (MQ=255) tGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGcc > 1:80356/1‑149 (MQ=255) tGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGcc > 1:292705/1‑149 (MQ=255) cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagt < 1:326107/149‑1 (MQ=255) gATGCTCGACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACTATCTGAGGCCAGTCAGTAATGTTACTGCCt < 2:213112/149‑1 (MQ=255) acgcgcTACGCTTATCAGACCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTg < 1:227676/147‑1 (MQ=255) cGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTATTGCCTGGCCTTTaa < 2:292705/149‑1 (MQ=255) ttATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 2:257850/1‑149 (MQ=255) | GTCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCA > NC_000913_3_pae_tpiA/2549339‑2549630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |