| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3780407 = | 23 (0.810) | 4 (0.150) | 4/270 | 3.4 | 15.7% | coding (581/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| ? | NC_000913_3_pae_tpiA | 3780433 = | 21 (0.780) | coding (607/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGCGGGTTGTTCGACGCTGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGAAAGACCTTGAATGGATCCGCGATT > NC_000913_3_pae_tpiA/3780263‑3780553 | cagcGGGTTGTTCGACGCTGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGAtgtg < 1:360772/149‑1 (MQ=255) agcGGGTTGTTCGACGCTGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTgg < 1:77106/149‑1 (MQ=255) agcGGGGTGTTCGACGCTGGTGTGCACCGTGGATATGCCGACACCGGGCGCACGGTACGGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGGTGCTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTgg < 2:250751/149‑1 (MQ=255) gttCGTCGCTGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAAc < 2:142146/149‑1 (MQ=255) tGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGGGGGATGTGGGCCTGAACGGTCGTCca > 2:408668/1‑149 (MQ=255) ggTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCcac < 1:344963/149‑1 (MQ=255) aCCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCCCATGAttt > 1:363129/1‑149 (MQ=255) gACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGACCGGTCGTCCACATGATTTAGGTAAATTCTCAg > 2:113838/1‑149 (MQ=255) aCGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGAAAAGTGCCAAAGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCa > 1:489659/1‑149 (MQ=255) cTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAac < 1:126363/149‑1 (MQ=255) cGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAaccgac < 1:418263/149‑1 (MQ=255) gcATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTgg > 1:366551/1‑149 (MQ=255) aTTCAGGGATGGGCGGCCCGAACGTGGCAATGCGCCGCGACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGAATTTTTTCTGCTTATCTCGGCAAACCGACCGGACTGGaa < 2:236279/149‑1 (MQ=255) aGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGAtt > 2:339276/1‑149 (MQ=255) tATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTAGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACa > 2:429734/1‑149 (MQ=255) aGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCgg < 1:17898/149‑1 (MQ=255) ggCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATa > 2:430265/1‑149 (MQ=255) tGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTc < 1:480793/149‑1 (MQ=255) aaGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCa < 1:339276/149‑1 (MQ=255) accgatGACACATCCCGAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGCCTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCAt < 2:469087/144‑1 (MQ=255) tttaTGTGCGGGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCAGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGAAAGACCTTGAAt < 2:125114/146‑1 (MQ=255) tGGGCGTGGGGTGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAACATATCTCGGCAAGCCGTACGGACTGGAAGATTACATCGGCTGGCTGGGAAATGACTTCGATCCGACCATATCATGAAAGGACCTTGAATggtt > 2:390227/1‑147 (MQ=255) ggATGTAGGCCCGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGAAAGACCTTGAATGGATCCGCGAtt < 1:197969/149‑1 (MQ=255) | CAGCGGGTTGTTCGACGCTGGTTTTCACCGTGGATATGCCGACACCGGGCGCACGCTACCGTGATGCGCATTCAGGTATGAGCGGCCCGAACGCGGCAATGCGCCGCTACTTGCAAGCGGTGACACATCCGCAATGGGCGTGGGATGTGGGCCTGAACGGTCGTCCACATGATTTAGGTAATATCTCAGCTTATCTCGGCAAACCGACCGGACTGGAAGATTACATCGGCTGGCTGGGGAATAACTTCGATCCGTCCATCTCATGGAAAGACCTTGAATGGATCCGCGATT > NC_000913_3_pae_tpiA/3780263‑3780553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |