| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3881116 = | 32 (1.130) | 8 (0.290) | 6/272 | 2.7 | 22.6% | coding (106/1074 nt) | recF | gap repair protein |
| ? | NC_000913_3_pae_tpiA | 3881133 = | 24 (0.880) | coding (89/1074 nt) | recF | gap repair protein | |||||
GCGCTCTTCGCCCTGTAATCGCCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATCTTCAATCTGC > NC_000913_3_pae_tpiA/3880985‑3881281 | cagccagagcgcggcttatgttgtccagccaatgagactgtaatgtccctcacccgcttgttgctacaaggtgtgctcaacatcaatacctcggatctcgccttatctcccggctttaactttctggtaggTGCCACTGCCGTTGGCAc > 1:491131‑M1/132‑149 (MQ=255) cagagcacggcttatgttgtcatgccaatgagactgtaatgtccctcacccgcttgttgatccgcgatttccgcaacattgaatccgcggatctcgccttatgcaacggctttaactttctagtagaCGCCACTGCAGTGGGCAACTAc > 2:309168‑M1/128‑149 (MQ=255) ttCGCCCTGTAATCGCCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCa < 1:396567/149‑1 (MQ=255) cccTGTAATCGGCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGCCGCGACCCTTCTGCAAACTGCGGAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGGCCTTGCCGTTGGCACCTACCAGaaa < 2:4765/149‑1 (MQ=255) cccTGTAATCGCCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGaaa < 1:195692/149‑1 (MQ=255) cTGTAATCGCCCGTGGAGAACAACCGCCTCCTGCGCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGt > 2:360540/1‑149 (MQ=255) gcttatgttgtcatgccaatgagactgtaatgtccctcacccgcttgttgatccgcgatttccgcaacattgaaaccgcggatctcgccttatctcccggctttaactttctggtaggTGCCACTGCCGTTGGCACCTAc > 1:1294‑M1/119‑140 (MQ=255) gcttatgttgtcatgccaatgagactgtaatgtccctcacccgcttgttgatccgcgatttccgcaacattgaaaccgcggatctcgccttatctcccggctttaactttctggtaggTGCCACTGCCGTTGGCACCTAc < 2:1294‑M1/22‑1 (MQ=255) cGCCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCCGAAAGTTAAAGcc > 2:314897/1‑149 (MQ=255) ttgtcatgccaatgagactgtaatgtccctcacccgcttgttgatccgcgatttccgcaacattgaaaccgcggatctcgccttatctcccggctttaactttctggtttTGCCACTGCCGTTGGCACCTAc > 2:61141‑M1/111‑132 (MQ=255) ttgtcatgccaatgagactgtaatgtccctcacccgcttgttgatccgcgatttccgcaacattgaaaccgcggatctcgccttatctcccggctttaactttctggtttTGCCACTGCCGTTGGCACCTAc < 1:61141‑M1/22‑1 (MQ=255) cccGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCgg < 1:164079/149‑1 (MQ=255) gaACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAg < 2:457608/149‑1 (MQ=255) gCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGtt < 2:162454/149‑1 (MQ=255) ccAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATcgcg < 2:284656/149‑1 (MQ=255) aaaCTGAGAAACGCCCGACCATGGCCGCGCGTATAGATGGCTTCCACCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATcaacaa < 1:81020/149‑1 (MQ=255) cTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCg > 1:116188/1‑149 (MQ=255) cTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCg > 2:471018/1‑149 (MQ=255) attgaaaccgcggatctcgccttatctcccggctttaactttctggtaggTGCCACTGCGGTTGGCACCTACCAGAAAg < 2:379545‑M1/29‑1 (MQ=255) attgaaaccgcggatctcgccttatctcccggctttaactttctggtaggTGCCACTGCCGTTGGCACCTACCAGAAAg > 1:379545‑M1/51‑79 (MQ=255) aaCGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGCTCAACAAGCGGGTGAg < 2:121403/149‑1 (MQ=255) aCGCCCGGCCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGGTTTGCCACGGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAgg < 2:10145/149‑1 (MQ=255) gTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGc < 1:417581/149‑1 (MQ=255) tataGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAgg > 2:228490/1‑128 (MQ=255) tataGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAgg < 1:228490/128‑1 (MQ=255) aggtcgCTTCTAGCACGCTGGTTTTGCCACCGCGGTTGGCACCTACCAGAAAGTTACAGCCGGGAGATAAGGCGAGATGCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGa < 2:154053/144‑1 (MQ=255) aTGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGaca < 2:453718/149‑1 (MQ=255) gCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCcg < 1:360540/149‑1 (MQ=255) gCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCCGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCcg < 1:471018/149‑1 (MQ=255) ctttctggtaggtgccaacggcagtggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAAt > 1:379545‑M2/30‑79 (MQ=255) ctttctggtaggtgccaaccgcagtggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAAt < 2:379545‑M2/50‑1 (MQ=255) gtagttgcccactgcagtggcgTCTACTAGAAAGTTAAAGCCGTTGCATAAGGCGAGATCCGCGGATTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGTGCTctg > 2:309168‑M2/23‑149 (MQ=255) gtaggtgccaacggcagtggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGc > 1:1294‑M2/23‑140 (MQ=255) gtaggtgccaacggcagtggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGc < 2:1294‑M2/118‑1 (MQ=255) gtaggtgccaacggcagtggca‑AAACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGacaa < 1:61141‑M2/110‑1 (MQ=255) gtaggtgccaacggcagtggca‑AAACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGacaa > 2:61141‑M2/23‑132 (MQ=255) gctttGCCACTGCCGTTGGCACCTAACAGAAAGTTAAAGCTGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTctgg < 2:23318/147‑1 (MQ=255) ttGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATACGGCGAGATCAGAGGTTCCAATGTTGCGGAAATCGTGGATTAACAAGCGGTTATCATTTATTAAACTCTCATCATCATTACAACATAATCCTCGCTctggctg > 2:295859/1‑149 (MQ=255) gtgccaacggcagtggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGAGGTATTGATGTTGAGCACACCTTGTAGCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCTGGACAACATAAGCCGCGCTctggctg > 1:491131‑M2/19‑149 (MQ=255) gCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATACGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAAAAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATc < 1:475920/149‑1 (MQ=255) aCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCCCTGGCTTGCCGCAtcttcattttg > 2:27465‑M2/2‑144 (MQ=255) ccTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATCTTCAATCTGc > 1:465682/1‑149 (MQ=255) | GCGCTCTTCGCCCTGTAATCGCCCGTGGAGAACAAACGCCTCCTGCTCATGGCGAATGACGCGACCAATCTGCAAACTGCGAAACGCCCGACCATGGCCGAGCGTATAGATGGCTTCCAGCACGCTGGTTTTGCCACTGCCGTTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATCTTCAATCTGC > NC_000913_3_pae_tpiA/3880985‑3881281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |