New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2724404 =	22 (0.670)	5 (0.160)	5/270	3.8	17.9%	coding (277/324 nt)	yfiM	putative lipoprotein
	?	NC_000913_3_pae_tpiA	2724422 =	25 (0.800)					coding (295/324 nt)	yfiM	putative lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGAGCCGGGATCGCAGTGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGA  >  NC_000913_3_pae_tpiA/2724277‑2724564                                                                                                                                                  |                                                                                                                                               gATGAGCCGGGATCGCAGTGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCtata                                                                                                                                             <  1:202328/149‑1 (MQ=255)                      cATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGAAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCGAGCACCGGCTATACCGTCTGGCAACTGACCCGTc                                                                                                                        >  2:60967/1‑149 (MQ=255)                       aTGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCa                                                                                                                       >  1:204617/1‑149 (MQ=255)                            ttgagggATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTaaa                                                                                                                  <  2:404780/143‑1 (MQ=255)                                 taaTGCTCTCTGTCAGCGTGGCGGCGTCAAAAGAGCTTTGGGATACCCCCCCCGAAGGGAGCGGCTGGGGCTGGAAGGATTTGGCCTGGGATGTCGCCGCTGCAAGCACCGTCTATACCGTCTGGCACTTGACCCGTCACCAAGTACGc                                                                                                             <  2:132138/147‑1 (MQ=255)                                    tGTTCTCTGTCAGTTGGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTCTGCCTGGGATGTGCCCGGTGCAAGCACCGGCTATACCCTCTTGCAACTGATTTGTCATTAAAGACGCATc                                                                                                          <  2:442792/149‑1 (MQ=255)                                      ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTg                                                                                                                                      <  1:95620/119‑1 (MQ=255)                                      ttCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTg                                                                                                                                      >  2:95620/1‑119 (MQ=255)                                                              aaaGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCTATGTAGCAtaca                                                                                >  1:151305/1‑146 (MQ=255)                                                                                     cGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACgg                                                         <  1:93450/149‑1 (MQ=255)                                                                                               gggtggagcgagaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGt                                               <  2:166064/146‑1 (MQ=255)                                                                                                        tggaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGAAGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAAACAGAAACGCCACCACGGGCATCCAGGTCACATACCa                                      >  1:184178/1‑149 (MQ=255)                                                                                                          gaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTACAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCCCATACCaca                                    >  2:42162/1‑147 (MQ=255)                                                                                                          gaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCaga                                    >  2:40420/1‑149 (MQ=255)                                                                                                          gaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCaga                                    >  1:489214/1‑149 (MQ=255)                                                                                                          gaAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCaga                                    >  1:490351/1‑149 (MQ=255)                                                                                                           aaGGATTTGGCCTGGGATGTCGCCAGTGCAAGCACCGGCTATACCTTCTGGCAACTCACCAGTCACTAAAGACGAATCCCCTACCCTTTGCGATGAAACATCAAACAAACCAGAAAAACCAACCCGACCATCAAGGGAACAACCCagaa                                   >  2:246153/1‑149 (MQ=255)                                                                                                            aGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCagaag                                  >  1:285116/1‑149 (MQ=255)                                                                                                               aTTTGGCCGGGGATGTCGGCGCTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGaagaag                               <  2:88316/149‑1 (MQ=255)                                                                                                                tttGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAgg                              <  1:498922/149‑1 (MQ=255)                                                                                                                tttGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAgg                              <  1:171555/149‑1 (MQ=255)                                                                                                                                gCCGGTGCAAGCACCGGCTATACCGTCTGGAAACTGACGCGTCACTAAAGACGCATCACATTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTAt              >  2:76409/1‑149 (MQ=255)                                                                                                                                 ccGGTGCTTGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTAtt             >  1:13449/1‑149 (MQ=255)                                                                                                                                 ccGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATAAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTGCCATACCTGtt             >  1:87989/1‑149 (MQ=255)                                                                                                                                        ttgCACCGGCTATACCGTCTGGCAACTGACCCGTCACTaaa                                                                                                                  <  1:538558/39‑1 (MQ=255)                                                                                                                                        ttgCACCGGCTATACCGTCTGGCAACTGACCCGTCACTaaa                                                                                                                  >  2:538558/3‑41 (MQ=255)                                                                                                                                        aaGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTc                  >  1:456249/1‑137 (MQ=255)                                                                                                                                        aaGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTc                  <  2:456249/137‑1 (MQ=255)                                                                                                                                            aCCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGa  <  2:514493/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               GATGAGCCGGGATCGCAGTGCCATGTTTGGATTGATGTTCTCTGTCAGTTTGGGGGCGTCAAAAGAGCTTTGGGATAGCCGCCCCGAAGGGAGCGGCTGGAGCTGGAAGGATTTGGCCTGGGATGTCGCCGGTGCAAGCACCGGCTATACCGTCTGGCAACTGACCCGTCACTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGA  >  NC_000913_3_pae_tpiA/2724277‑2724564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.