New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 318648	38 (1.040)	4 (0.120)	4/264	4.6	10.4%	intergenic (‑81/+28)	rclB/rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
	?	NC_000913_3_pae_tpiA	= 318654	34 (1.010)					intergenic (‑87/+22)	rclB/rclA	reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCATTGGTGGAAAATGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGAT  >  NC_000913_3_pae_tpiA/318501‑318795                                                                                                                                                     |                                                                                                                                                    cTGCAGTGGGTGAAAAGGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATTAATGAAGTTATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAat                                                                                                                                                    <  2:554208/149‑1 (MQ=255)     aTTGGTGGAAAATGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATAttt                                                                                                                                                <  2:223314/149‑1 (MQ=255)     aTTGGTGGAAAATGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATAttt                                                                                                                                                >  1:365323/1‑149 (MQ=255)         gtggAAAATGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGGGATTAAGACGGTATAGAGTAACAGACAATTAATAAGATCCTTTTCTCTGAGA‑CGCCAGAATATTTGTTc                                                                                                                                            >  2:255695/1‑149 (MQ=255)                     aTAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAACAAATATTCTGGCGTCtcaga                                                                                                                                <  1:618634/149‑5 (MQ=255)                           ccAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGt                                                                                                                          >  1:305773/1‑149 (MQ=255)                             aGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGttt                                                                                                                        >  1:249977/1‑149 (MQ=255)                               ataataGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTAt                                                                                                                      <  1:162533/149‑1 (MQ=255)                               ataataATGTTGCAAATAAAACCGATTTTTTAAACATACAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTAt                                                                                                                      <  1:162426/149‑1 (MQ=255)                                 aataGTGTTGCAAATAAAACAGATTTTTCAAACATATAAGATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTAttt                                                                                                                    <  1:247903/149‑1 (MQ=255)                                        ttGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAAt                                                                                                             >  1:192912/1‑149 (MQ=255)                                              aTAAAACAGATTTTTTAAACATAAAAAATACCATTAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAAt                                                                                                       <  2:480539/149‑1 (MQ=255)                                               tAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTATTTTGTGTGAGA‑AGTCATAATATTGGTGCGGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATa                                                                                                      >  2:298591/1‑149 (MQ=255)                                                 aaaCAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATCAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGa                                                                                                    >  2:166771/1‑149 (MQ=255)                                                 aaaCAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGa                                                                                                    >  1:545286/1‑149 (MQ=255)                                                 aaaCAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGa                                                                                                    <  2:434234/149‑1 (MQ=255)                                                   aCAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATc                                                                                                  >  1:138613/1‑149 (MQ=255)                                                                aCATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCg                                                                                     <  1:45166/149‑1 (MQ=255)                                                                     aaaaaTACAATCAATGAAGTGATTAAGGAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTTACTAATGAAAATAGATCATTGAGTGATTCGCTCAt                                                                                <  2:497495/148‑1 (MQ=255)                                                                         acaCCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGAc                                                                            <  2:126978/147‑1 (MQ=255)                                                                             cATAAATGAAGTGATTAAGAAGTTAGAGAGTCACAGAGACTTCATAAGATTCTTTTCTCTGAGACCACCAGCA‑AGGTGCCCCCGTATTGGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGAt                                                                        <  1:633159/149‑1 (MQ=255)                                                                                     aaGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGACAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAat                                                                <  1:298591/149‑1 (MQ=255)                                                                                        tGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATc                                                             <  2:192912/149‑1 (MQ=255)                                                                                             aagaagTTATAGAGTAACAGGAAATTAATAAGATTCGTTTCTCCGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGTTCATTGAGTGATTCGTTCATCGTCGGATGAGTAAATAGCTTATc                                                        <  2:223003/149‑1 (MQ=255)                                                                                              agaagTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATcg                                                       >  2:289916/1‑149 (MQ=255)                                                                                                  gTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTa                                                   <  2:340695/149‑1 (MQ=255)                                                                                                        gagTAACAGAGAATTAATAAGATTCTTTTCCGTGAGA‑CGCCAGAATATTTGGTCTGACGTCTGATTTTAAGTCTATTTGACTAATGAAAATAGATGATTGAGTGATTCGCTCATCTACCGATGCGTCAATATCGGATCGCGTACAATGc                                             >  2:473768/1‑149 (MQ=255)                                                                                                             aCAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATaa                                        <  2:545286/149‑1 (MQ=255)                                                                                                               agagAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAgg                                      >  1:331702/1‑149 (MQ=255)                                                                                                                        ataaGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGc                             >  1:588643/1‑149 (MQ=255)                                                                                                                         taaGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGca                            <  2:249977/149‑1 (MQ=255)                                                                                                                         taaGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGca                            >  1:79387/1‑149 (MQ=255)                                                                                                                            gATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTGATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGcatcc                         >  1:425164/1‑149 (MQ=255)                                                                                                                               tCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGcatccatc                      >  2:21970/1‑149 (MQ=255)                                                                                                                                      tctGAGA‑CGCCAGAATATTTGTTCTGGCGTTTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCAttt               <  2:570901/149‑1 (MQ=255)                                                                                                                                          aga‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGt                                                                                           <  2:85747/69‑1 (MQ=255)                                                                                                                                          aga‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGt                                                                                           >  1:85747/1‑69 (MQ=255)                                                                                                                                                 cAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCAATTTCTCTATAtt     >  1:600312/1‑149 (MQ=255)                                                                                                                                                    aaTATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGat  <  1:470671/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTGCATTGGTGGAAAATGCCATAACGCCAGATAATAGTGTTGCAAATAAAACAGATTTTTTAAACATATAAAATACCATCAATGAAGTGATTAAGAAGTTATAGAGTAACAGAGAATTAATAAGATTCTTTTCTCTGAGA‑CGCCAGAATATTTGTTCTGGCGTCTGATTTTGAGTTTATTTGACTAATGAAAATAGATCATTGAGTGATTCGCTCATCGACGGATGAGTAAATATCTGATCGCGTAATATGCTATAAGGCAGCCCGGCATCCATCACCATTTTCACTATATTGAT  >  NC_000913_3_pae_tpiA/318501‑318795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.